LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr9376g00004	ATGGCGGAGGCAGCTTCTGTTGGACTTGGTCCCAGATATGCACCAGATGATCCCACCCTTCCGCAACCGTGGAAGGGGTTGATTGATGGCAGCACTGGTCTGTTATACTATTGGAATCCTGAAACTAATGTTACTCAGTACGAAAAACCGGCTCCAATAACCCCACCTGTGCCTTCAGGCCCTGCTCCTGTGGCTTCTGCGCCGAGCCTGACACCTATTCCTGCAGCTCACATAATGCAGCCTGGTGGGATGGTGCAGCAGCACGAGCAGCTGTTGTTGCAAGTGCAACCCTCACAACAGCAGGTGGGTCACCTTGCCCATCAGCACGGGCAATCGATGCCACAGCAACAGCAGCAACAGAGTCCCCATGTGGCGCAGGTCCCTCAGCAATGGTCTTCTCAGGGTCTGCAGAATGCTTCGCAGCAGAACTCACAGATGGCACAGTCAGTGCCGCAGCCTGGATTACATCAAGCCAGGCAGCAAATGATGCAGCCTCAAGGACAGCAAATGCATCATCAGATGCCGCCACAGGCGATCCATTCCCAGCATTTTGGGCAAGGTACACCTCAAGATCATGGCTCGCAAGTTGTACAGCCGCAGGCACATCAATTCACTTCCCAAAATATGCATTATATGTCTTATCAACAAAACATTATTACACCCAGGCAACCAAACTCCCAGCACATTCAGCCAAACATGGTCTCCCCCGGGCAACATAACTCCCAGCAGGTTCAGCATAACATGCATGGTCAGCCATTTGAAAATCAACAGAGTGCATTTCCCAAGGTAGAGGAAGTGGAGTTTAAAAATGGAAGTCAGATTGGACATTCACCATTGCAGCAAGGTGGATCTGATTTATTTTACCAACATGGTCCTAACTTTCATAACCAGATGAGCCCAGGAATGATGCATGGTCATCCATCCAATGTCCGTCCTGCCAGCCAAAAGATAGGTCACGAGGATAATTTACATGGTAGAGCTGAGAATGAATATTACTATAATTCTAACAAAGATATGTCAACAATGGGTCGTCAGCAGCCAAATATGACGCAGATACCTGTTACTAGAAATCAACAGGATACGAGGATTGGCAACACTCCTTTTCAAAATGCAATGCCTAGTGGAAATGGAAGTGGTATTGCTGGAAATGCTATTCATAGCATGTTTACTCCTCCAATAGGAGGACCTTCACCTCACTCTACTAACTCTTTGATGAGGCCTCCTTATATGGCATCTTCAGATGTTACGGATCTCTCACCAGCTGAAATTTACTGTCAGCAACATGAAGTTATAGCAACGGGTGACAACATTCCACCTCCTTTCATGACATTTGATGCTAGTGGGTTCCCTCCAGAGATTTTGAGAGAGATATATTCTGCTGGCTTCTCAAATCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATAGTAGCAATTGCCAAAACAGGCTCTGGGAAAACATTAGGCTACTTAATCCCTGCCTTCGTTCTTCTTAGACAGCGACGTAATAATTCTCTGAATGGCCCCACTGTTTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGATGAGGTCATCAAATTTGGTCGATCATCTCGAGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAACTAAAAGAGTTAGATAGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTTGGGCAAGTATCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCACGCCGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTGGCGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAGTGTGGATGAGCTTGTTGCAAATAAAGCAATCACACAGTGGTTAATAGCAGCCGGAGCGGCCACTATAGCGGAGGAACGGGGCGGAGCGGCAGCGGCACGCGACAGAATCTGTGTAGCGGTGCAGTTCAATGTCGCAACTGTCGAGGCCGCGATAACGGCGGAGCAGAGCGGCAGTTATAGCGAAAAATCGTGGCGGAGCAGTTTCTGCCTATACCAAGACCCCTTTTCCTTCTCTGTTTCCAGCCACTCATGCTCTGTTTCTGTTCCTTTTATGAATTTTGAGTAA	2238	0.4741	MAEAASVGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPAPITPPVPSGPAPVASAPSLTPIPAAHIMQPGGMVQQHEQLLLQVQPSQQQVGHLAHQHGQSMPQQQQQQSPHVAQVPQQWSSQGLQNASQQNSQMAQSVPQPGLHQARQQMMQPQGQQMHHQMPPQAIHSQHFGQGTPQDHGSQVVQPQAHQFTSQNMHYMSYQQNIITPRQPNSQHIQPNMVSPGQHNSQQVQHNMHGQPFENQQSAFPKVEEVEFKNGSQIGHSPLQQGGSDLFYQHGPNFHNQMSPGMMHGHPSNVRPASQKIGHEDNLHGRAENEYYYNSNKDMSTMGRQQPNMTQIPVTRNQQDTRIGNTPFQNAMPSGNGSGIAGNAIHSMFTPPIGGPSPHSTNSLMRPPYMASSDVTDLSPAEIYCQQHEVIATGDNIPPPFMTFDASGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFVLLRQRRNNSLNGPTVLVLAPTRELATQIQDEVIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELVANKAITQWLIAAGAATIAEERGGAAAARDRICVAVQFNVATVEAAITAEQSGSYSEKSWRSSFCLYQDPFSFSVSSHSCSVSVPFMNFE	745

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr9376g00004	745	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	593	601	IPR000629	-
	Mupr9376g00004	745	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	426	649	IPR027417	-
	Mupr9376g00004	745	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	473	647	IPR014001	-
	Mupr9376g00004	745	MobiDBLite	consensus disorder prediction	1	20	-	-
	Mupr9376g00004	745	CDD	WW	21	52	IPR001202	GO:0005515
	Mupr9376g00004	745	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	395	664	-	-
	Mupr9376g00004	745	SMART	ultradead3	461	664	IPR014001	-
	Mupr9376g00004	745	ProSiteProfiles	WW/rsp5/WWP domain profile.	18	52	IPR001202	GO:0005515
	Mupr9376g00004	745	Gene3D	-	418	654	IPR027417	-
	Mupr9376g00004	745	SMART	ww_5	19	52	IPR001202	GO:0005515
	Mupr9376g00004	745	SUPERFAMILY	WW domain	12	51	IPR036020	GO:0005515
	Mupr9376g00004	745	Pfam	WW domain	20	50	IPR001202	GO:0005515
	Mupr9376g00004	745	MobiDBLite	consensus disorder prediction	98	200	-	-
	Mupr9376g00004	745	FunFam	probable ATP-dependent RNA helicase DDX17	407	650	-	-
	Mupr9376g00004	745	Gene3D	-	14	52	-	-
	Mupr9376g00004	745	Pfam	DEAD/DEAH box helicase	466	636	IPR011545	GO:0003676\|GO:0005524
	Mupr9376g00004	745	ProSitePatterns	WW/rsp5/WWP domain signature.	24	50	IPR001202	GO:0005515
	Mupr9376g00004	745	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	442	470	IPR014014	GO:0003724

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr9376g00004	Mupr-Chr9376	23534	29756	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr9376g00004	430	668	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.636	1.14e-32	129

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr9376g00004	K12823		-	gmx:100807830	1066.22