LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr9315g00001	ATGCCTACACATCTGTTAACCCAATTGCGTATTCTCCACCCCTTCTTCCCCATGAAGCCCCGCACTCTCCCTCTTCTCTCTCGAACCTTCTTCTTCCCTCCCTCCAAGTTCCTCCGAAACGCCTCGTTTAAGCCTCGCTCATTCTCCGCCCGGGCCCACAGCAGGGAAAAGCTCCCCCTCCGCCACTCCAAGAGCCTCGTCGACGACGAGGCCGACCTCAGCGACTGGGTCGACGAGCTGCGCACCGCCCGCTTTGACGACTCCTCCCGCTCCGGCCAGCGGTTCGGCCGCGACGACGGCGAAGAACGCGAGTTCCGGCCGCGGAGGACTAATAATAACAACAATAATAGGGTTTCCGCGTTGGGGAAGAGGAGGGGAAGTCAGAGTGGCAATGCGAGGAGAAAGTTTCAACCGAGGAGTGATAATGATGATGACGATGTCGATGAGAGAGTGGGTGGAAGAACGTTCAAAGGTGGTGGTGTTGGAGCGTTTCTTACTGAAGATGAGGATGAAGAGAGTGAAGGGAGTGAGGAGGAGGAGATATTGAGCAAGAGTAGAACCGCTTTGTTTGGTCAGCAAAACGGTTTGAACCGGAGGACCACTGAACCTACTCCTAGACCTGCTTCCCCTGGAGGATCTGATTCTTATTTAAGTGACACCAGATTTGACCAATGTTCAGTCTCCCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACTATTGTGCAAGAGGCTACACTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAAGACAGGCACCGGGAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTGGCAAAGACACCTCCAAGTGATCGTGATCAAAGGCGGCCACCAATTCTTGTACTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTACAGAGGCCACTAAACTGCTGAAGTATCATCCTATGATTGGTGTTCAAGTTGTGATTGGAGGGACAAGACTTGCTTTAGAACAGAAAAGAATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGGCTTAGAGATCATATTGAGAATACTGCTGGTTTTGCAACTAGGCTGATGGGTGTGAAGGTCTTAGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTCCCTAAACAACGACAAAGTCTTATGTTTTCTGCTACCATTCCAGAAGAGGTACGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGTACTGAGGAGACACATTCACAGGTCCGCCAGACGCATTTAGTTGCCCCATTGGACAAGCATTTCTCTTTACTATATGTTCTTCTGAAGGAACACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATTCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACATCAGACGTCTCTGCCCGTGGAGTTGATTATCCAGATGTCACTCTTGTTGTACAGGTTGGTTTGCCAACAGATAGAGAACAGTATATCCATCGGCTGGGTAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTACTGGCTCCTTGGGAAGACTTCTTTTTATCTACCGTAAAAGATTTGCCTATTGAGAAAGCTCCAGTACCTTCAGTTGATCCTGATACTAAGAAAAAGGTGGAAAAAGCTGTATCCCATGTGGAGATGAAGAATAAAGAAGCAGCATATCAAGCATGGCTTGGTTACTACAATTCGAACAAGAAAGTGGGGCGTGACAAGTATAGGCTAGTAGAGCTTGCAAACGAATTTAGTCGAAGCATGGGGCTTGATAACCCTCCAGCTATTCCTAAGCTAGTCCTTGGCAAGATGGGCCTTAGGAATATCCCTGGTTTACGTTCCAAATAG	2067	0.4722	MPTHLLTQLRILHPFFPMKPRTLPLLSRTFFFPPSKFLRNASFKPRSFSARAHSREKLPLRHSKSLVDDEADLSDWVDELRTARFDDSSRSGQRFGRDDGEEREFRPRRTNNNNNNRVSALGKRRGSQSGNARRKFQPRSDNDDDDVDERVGGRTFKGGGVGAFLTEDEDEESEGSEEEEILSKSRTALFGQQNGLNRRTTEPTPRPASPGGSDSYLSDTRFDQCSVSPLSLKGVKDAGYEKMTIVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVAKTPPSDRDQRRPPILVLVICPTRELASQAATEATKLLKYHPMIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQSLMFSATIPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQTHLVAPLDKHFSLLYVLLKEHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPTDREQYIHRLGRTGRRGKEGQGILLLAPWEDFFLSTVKDLPIEKAPVPSVDPDTKKKVEKAVSHVEMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRSK	688

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr9315g00001	688	MobiDBLite	consensus disorder prediction	87	220	-	-
	Mupr9315g00001	688	Gene3D	-	443	666	IPR027417	-
	Mupr9315g00001	688	PANTHER	RNA HELICASE	177	619	-	-
	Mupr9315g00001	688	CDD	SF2_C_DEAD	449	582	-	-
	Mupr9315g00001	688	SMART	helicmild6	492	573	IPR001650	-
	Mupr9315g00001	688	Gene3D	-	180	435	IPR027417	-
	Mupr9315g00001	688	MobiDBLite	consensus disorder prediction	111	135	-	-
	Mupr9315g00001	688	MobiDBLite	consensus disorder prediction	186	220	-	-
	Mupr9315g00001	688	Pfam	DEAD/DEAH box helicase	246	422	IPR011545	GO:0003676\|GO:0005524
	Mupr9315g00001	688	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	251	434	IPR014001	-
	Mupr9315g00001	688	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	220	248	IPR014014	GO:0003724
	Mupr9315g00001	688	Pfam	Helicase conserved C-terminal domain	468	573	IPR001650	-
	Mupr9315g00001	688	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	297	588	IPR027417	-
	Mupr9315g00001	688	MobiDBLite	consensus disorder prediction	87	110	-	-
	Mupr9315g00001	688	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	468	615	IPR001650	-
	Mupr9315g00001	688	SMART	ultradead3	239	452	IPR014001	-
	Mupr9315g00001	688	MobiDBLite	consensus disorder prediction	136	153	-	-
	Mupr9315g00001	688	CDD	DEADc_MSS116	227	436	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr9315g00001	Mupr-Chr9315	2534	8126	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr9315g00001	220	601	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.070	3.35e-46	167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr9315g00001	-		-	gmx:100795739	1118.99