Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9299g00002 ATGGCCAGTTTCTCAGGAACCACACAAAAGTGCATGGCTTGTGACAAAACCGTGTACCTTGTTGATAAACTAACCGCAGATGGCCGTATCTTCCATAAGGCCTGCTTCCGATGCCACCATTGCCGCAGTACCCTTAAGCTTAGCAACTACTGTTCTTTTGAGGGAGTGCTCTACTGCAGACCTCACTACGATCAACTCTACAAAAGAACTGGCAGCCTGGACAAAAGCTTCGAAGGAACACCCAAAATTCAGAAACCAGAGAGACCAATCACTGAAAATGAGAATACTAAGGTCATCGCAAACGTGTTCTTGGGCACCAGAGACAAATGCGTGGGTTGCAAAAAGACAGTGTATCCAACTGAGAGGGTTACGATCAATGGTACTCCCTACCACAAGAGCTGCTTCAAATGTACCTATGGAGGTTGCACCATAAGCTCATCAAACTTCGTTACACACGAGGGAAAGCTCTACTGCAAGCACCACCACATTCAACTATTCAAGGAGAAGGGTAACTACAGCCAGCTCGATAACGACCAAGCCAATACCACCGAAGTCAATGCTTAA 564 0.4645 MASFSGTTQKCMACDKTVYLVDKLTADGRIFHKACFRCHHCRSTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKIQKPERPITENENTKVIANVFLGTRDKCVGCKKTVYPTERVTINGTPYHKSCFKCTYGGCTISSSNFVTHEGKLYCKHHHIQLFKEKGNYSQLDNDQANTTEVNA 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9299g00002 187 FunFam LIM domain and actin-binding 1 104 174 - -
Mupr9299g00002 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Mupr9299g00002 187 CDD LIM1_SF3 7 69 - -
Mupr9299g00002 187 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Mupr9299g00002 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Mupr9299g00002 187 FunFam LIM domain and actin-binding 1 5 75 - -
Mupr9299g00002 187 SMART lim_4 109 161 IPR001781 -
Mupr9299g00002 187 SMART lim_4 10 62 IPR001781 -
Mupr9299g00002 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Mupr9299g00002 187 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Mupr9299g00002 187 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Mupr9299g00002 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Mupr9299g00002 187 PANTHER OS06G0237300 PROTEIN 4 93 - -
Mupr9299g00002 187 Pfam LIM domain 110 165 IPR001781 -
Mupr9299g00002 187 Pfam LIM domain 11 65 IPR001781 -
Mupr9299g00002 187 Gene3D Cysteine Rich Protein 105 174 - -
Mupr9299g00002 187 Gene3D Cysteine Rich Protein 5 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9299g00002 Mupr-Chr9299 13476 14672 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Mupr9299g00002 LIM 2.9e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9299g00002 K09377 - gmx:100306027 357.066