Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9288g00002 ATGGCCGAGACTCGGAGATCTACCGGCACGGTTAAGTGGTTCAACGCGCAGAAGGGTTTCGGATTCATTACTCCCGAAGATGGCTCCGAGGATCTCTTCGTGCACTTCACTTCCATCCGATCCGATGGCTATCGCTCCTTGTCCGAGGGTCAGTCCGTCGAGTTCTTCCTCGATTACGGCGAGGATGGTCGAACCATGGCCGTCGACGTCACCTCCGCCGTTAGATCTCGTCGTCCTGCCGGATTTCGAGGCGGAGGTGGGAGGGGAAGAGGAGGGGGACGCTACGGCGCCGGGGATACCCGTGGCAGAGGGATCGCCCGCAGAGGAGGTTACGGCGGTGGAGGAGGCTACGGTGGTGAAGGTCCCGAGTGTTATAATTGTGGAAGAATAGGTCACTTGGCGAGGGATTGTTACCAGGGACAGGGTGACGCTGATGGTGATGGTAGGAATCGGAGACGCCGCGGCGGTGGTGGCGGTGGCGGCGGCAGAGGTGGTGGTGGTGGTGGAGGAAGGTGTTTTAATTGTGGGGAGGAAGGGCATTTTGCCCGGGAGTGTCCTAGTTCATTGCCATTTGGTTCCAAACTTGTTTTGCAGGCTTTGCAAATTGCTATTTCTAATACCGTTCTTTTTGGAGTCATTATGCTTGTTCCTCCCGTTGAATATGAAGCAACTCAAGGCAAAATTAATGCAAAGGTTTTGGGAATGTTGGAGGATAGGCCGAGATCAACTCGGCCCAAGAAGGGGAGTCGCCATCAGTGTTTTAGGAACACTGGAAAACCAAGGATGAATAAGACTAGGTTGCGAACCAGCTGGGTTCGAAAGTTGGTTACGCGTCGGGGGCAGGGGGTGCCCCCAACACATCTGCCACTCGACAGTTACCTAAGGTTGAGCTAG 894 0.5515 MAETRRSTGTVKWFNAQKGFGFITPEDGSEDLFVHFTSIRSDGYRSLSEGQSVEFFLDYGEDGRTMAVDVTSAVRSRRPAGFRGGGGRGRGGGRYGAGDTRGRGIARRGGYGGGGGYGGEGPECYNCGRIGHLARDCYQGQGDADGDGRNRRRRGGGGGGGGRGGGGGGGRCFNCGEEGHFARECPSSLPFGSKLVLQALQIAISNTVLFGVIMLVPPVEYEATQGKINAKVLGMLEDRPRSTRPKKGSRHQCFRNTGKPRMNKTRLRTSWVRKLVTRRGQGVPPTHLPLDSYLRLS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9288g00002 297 Pfam 'Cold-shock' DNA-binding domain 8 71 IPR002059 GO:0003676
Mupr9288g00002 297 Gene3D - 100 151 - -
Mupr9288g00002 297 ProSiteProfiles Zinc finger CCHC-type profile. 171 187 IPR001878 GO:0003676|GO:0008270
Mupr9288g00002 297 SUPERFAMILY Retrovirus zinc finger-like domains 109 140 IPR036875 GO:0003676|GO:0008270
Mupr9288g00002 297 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Mupr9288g00002 297 Gene3D - 1 71 IPR012340 -
Mupr9288g00002 297 SMART csp_8 8 73 IPR011129 GO:0003676
Mupr9288g00002 297 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Mupr9288g00002 297 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Mupr9288g00002 297 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Mupr9288g00002 297 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Mupr9288g00002 297 Pfam Zinc knuckle 123 137 IPR001878 GO:0003676|GO:0008270
Mupr9288g00002 297 Pfam Zinc knuckle 171 187 IPR001878 GO:0003676|GO:0008270
Mupr9288g00002 297 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Mupr9288g00002 297 MobiDBLite consensus disorder prediction 79 110 - -
Mupr9288g00002 297 FunFam Cold shock protein CspC 6 73 - -
Mupr9288g00002 297 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 187 - -
Mupr9288g00002 297 SMART c2hcfinal6 171 187 IPR001878 GO:0003676|GO:0008270
Mupr9288g00002 297 SMART c2hcfinal6 123 139 IPR001878 GO:0003676|GO:0008270
Mupr9288g00002 297 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Mupr9288g00002 297 SUPERFAMILY Retrovirus zinc finger-like domains 153 195 IPR036875 GO:0003676|GO:0008270
Mupr9288g00002 297 ProSiteProfiles Zinc finger CCHC-type profile. 124 137 IPR001878 GO:0003676|GO:0008270
Mupr9288g00002 297 MobiDBLite consensus disorder prediction 141 166 - -
Mupr9288g00002 297 MobiDBLite consensus disorder prediction 239 260 - -
Mupr9288g00002 297 Gene3D - 165 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9288g00002 Mupr-Chr9288 19200 21829 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Mupr9288g00002 CSD 9.7e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9288g00002 - - gmx:100815773 193.356