Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr9280g00001 | ATGGAAGAAGATCAAGAAGTGAAGCACGTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGTAGATCCTTGGGAGGCCACATGAGGTCACACGTGAGCAACAATGTTTCAACCGAGGCAGAGAAGCTTTCGTCTTTCAACGGTGGAGGGGACATGGGAACGGGTTCTGAAGGAGGAGCTAACAATGGAGGAGGAGGGTATGGTTTGAGAGAGAACCCGAAGAAGACTTGGAGGTTCACGGATTCGAGTGAGGACACTACTCTTGTGCTGGACAAGTTGTGCAAGGAGTGTGGCAAAGGGTTTCACTCTTGGAAGGCTCTGTTTGGTCACATGAAGTGCCACTCTGAGAGAGTGTCCCAAAACAACAGCTTGTTGGAGGATCAAGATTCCTGGAATGATAATGTCAATGCTAGCCAGAAGATGATGCTGGATGATAGCCACTCTGACAATGAGGCCACTGCTCCAAATAGAAGGAGAAGATCCAAGAGGAGAAGGACAAGGTACTTGGCTCCATCAACTTCTTCTGTGTCCTTTGTTTCTGAGGCTGAGCAAGAGCAGGAAGAGGTTGCCATGAGTTTGATTATGCTTAGTAGGGATGTGACTCCTTGGTGTGGTCTCAATTCTCTTCCTCATAACAACTCGTTGCACTTTGAATCTCCTTCTTTAGCTTCTAAGGTTGAGGGCAAGAGGGTTGTGTCCAATTGTTCTGAGATGCCAAAAAAGGTTACCAAACCAAGGGATATGAAGTGGGAGTTTGGAAATTTGGATGCTTCAAATCTAAACTCCAAAGGGAAAATAAGTTCAGAGCTTTTGGGTGCTGAGAGTCCTGAAAGTGGATTTGGGGTCAACAAGACCATGAATGGGAAGAAGGATAAGAAGCCTGAGCTTGATTCTAGTTCTGCATTTGAGGACAATGGAACAGATGAGAATAGTAATAATAAGTACACTTCAATCAAGGCTAAGTTTCTGGATTCTGAATTGAAGTCAAGTTCTTTGAAGAGGTGGGTGAGCAACAAGGCTCCAGAAGGTGAATTGAGCAAAAGCTCCAATAAGAGAGGGAAGTTTGAGTGTACTACTTGCAAGAAAATCTTCCACTCATACCAAGCACTTGGAGGCCACAGAGCTAGTCACAAGAAGATCAAGGGTTGCTTTGCTTCAAGAAATGAGAGCAGTGAGAACAGCACTGAGTTGGAAGCAGACCTCTCCCCTGACCCAACAACAGAAAGTAAGCTCCTGAAGAATGAATATATGGAAGAATATGAAATGGTTAGTGTTACTACTACTGAGGCAGACACAGTGAGAGAGTCCAAGAAGGGGAAAGGGCATGAGTGCCCAATTTGCCTCAAGGTTTTCCCATCTGGCCAAGCCTTGGGTGGTCACAAGAGATCTCATCACTTGGCTGGTGGGTCTGAGAGTGCTAGAAACTGTCAAAGTCAAACAGTTGTACTTGAGGGTGCTGCCCCAGAAATTAGGGACTTTTTTGATCTTAACCTTCCTGCTTCTACAGAGGAAGAAGGTAATAGCCATGGCCATGCTGAACCTTACAGACCTTGGTGGGTAGTAGGAGGCAGCCATAAGCAGGAGGCACTGGGCCAACAACATGGTGCAGCTTACAAAACGGCACTTGTTGGCAGTGCTAGA | 1641 | 0.4619 | MEEDQEVKHVCKFCSKSFPCGRSLGGHMRSHVSNNVSTEAEKLSSFNGGGDMGTGSEGGANNGGGGYGLRENPKKTWRFTDSSEDTTLVLDKLCKECGKGFHSWKALFGHMKCHSERVSQNNSLLEDQDSWNDNVNASQKMMLDDSHSDNEATAPNRRRRSKRRRTRYLAPSTSSVSFVSEAEQEQEEVAMSLIMLSRDVTPWCGLNSLPHNNSLHFESPSLASKVEGKRVVSNCSEMPKKVTKPRDMKWEFGNLDASNLNSKGKISSELLGAESPESGFGVNKTMNGKKDKKPELDSSSAFEDNGTDENSNNKYTSIKAKFLDSELKSSSLKRWVSNKAPEGELSKSSNKRGKFECTTCKKIFHSYQALGGHRASHKKIKGCFASRNESSENSTELEADLSPDPTTESKLLKNEYMEEYEMVSVTTTEADTVRESKKGKGHECPICLKVFPSGQALGGHKRSHHLAGGSESARNCQSQTVVLEGAAPEIRDFFDLNLPASTEEEGNSHGHAEPYRPWWVVGGSHKQEALGQQHGAAYKTALVGSAR | 547 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr9280g00001 | 547 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 355 | 382 | IPR013087 | - | |
| Mupr9280g00001 | 547 | SMART | c2h2final6 | 9 | 31 | IPR013087 | - | |
| Mupr9280g00001 | 547 | SMART | c2h2final6 | 92 | 114 | IPR013087 | - | |
| Mupr9280g00001 | 547 | SMART | c2h2final6 | 355 | 377 | IPR013087 | - | |
| Mupr9280g00001 | 547 | SMART | c2h2final6 | 442 | 464 | IPR013087 | - | |
| Mupr9280g00001 | 547 | SUPERFAMILY | beta-beta-alpha zinc fingers | 355 | 464 | IPR036236 | - | |
| Mupr9280g00001 | 547 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 11 | 31 | IPR013087 | - | |
| Mupr9280g00001 | 547 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 357 | 377 | IPR013087 | - | |
| Mupr9280g00001 | 547 | MobiDBLite | consensus disorder prediction | 36 | 73 | - | - | |
| Mupr9280g00001 | 547 | MobiDBLite | consensus disorder prediction | 271 | 313 | - | - | |
| Mupr9280g00001 | 547 | Gene3D | Classic Zinc Finger | 352 | 464 | - | - | |
| Mupr9280g00001 | 547 | MobiDBLite | consensus disorder prediction | 141 | 168 | - | - | |
| Mupr9280g00001 | 547 | MobiDBLite | consensus disorder prediction | 386 | 408 | - | - | |
| Mupr9280g00001 | 547 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 519 | - | - | |
| Mupr9280g00001 | 547 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 442 | 464 | IPR013087 | - | |
| Mupr9280g00001 | 547 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 94 | 114 | IPR013087 | - | |
| Mupr9280g00001 | 547 | Gene3D | Classic Zinc Finger | 1 | 118 | - | - | |
| Mupr9280g00001 | 547 | Pfam | C2H2-type zinc finger | 442 | 465 | - | - | |
| Mupr9280g00001 | 547 | Pfam | C2H2-type zinc finger | 9 | 31 | - | - | |
| Mupr9280g00001 | 547 | Pfam | C2H2-type zinc finger | 355 | 379 | - | - | |
| Mupr9280g00001 | 547 | Pfam | C2H2-type zinc finger | 94 | 115 | - | - | |
| Mupr9280g00001 | 547 | MobiDBLite | consensus disorder prediction | 386 | 402 | - | - | |
| Mupr9280g00001 | 547 | SUPERFAMILY | beta-beta-alpha zinc fingers | 9 | 114 | IPR036236 | - | |
| Mupr9280g00001 | 547 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 92 | 119 | IPR013087 | - | |
| Mupr9280g00001 | 547 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 9 | 36 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr9280g00001 | Mupr-Chr9280 | 1307 | 4031 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mupr9280g00001 | 1 | 504 | C2H2 Transcription Factor Family | AT1G26610 | 33.886 | 4.49e-55 | 190 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Mupr9280g00001 | zf-C2H2_6 | 1.5e-10 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mupr9280g00001 | - | - | vra:106757260 | 799.66 |