Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr9175g00001 | ATGAGTTCGCGAACGGCGAGGAGCCAACGGCGGAGGAAGATGAATTTGGAGCTCGACCTGAACCGTGATCCGCCCGCGGAGAATGTTCGAGAAGACGAGGAGGGACCCTCCACGCAGCAGCAGCAGCAGCAGCAACAACACCAACAGCAACCTCAAGTTCCAATGATTGACGTCGACGCCATTGATGACGATGTCGTTGAGTCTTCACCTAGGGCTTTCGCTGAGGCTAAGAGCAATGCCAGGAGGAGAGTTCGCAGAAGGACTGTTGTTGACGTGGACTTAGTAGATGGGACCAGAGGAGATCCCCCAAACCAAACAATCATCAATGGCAATCTTTACATAAATTTGGATACCAGTAGCAGTTCTGCGCGTGAAAATGCTCCGAAGTCACCTGAACGTCCTAAGGAGCCTGTATTTAATTGTCCAATATGTATGGGTCCTTTAGTAGAAGAAATGTCAACAAGGTGTGGTCATATTTTTTGCAAGACTTGCATTAAAACTGCCGTAGCTGCACAGGGTAAATGCCCAACCTGTAGAAAGAAGGTCACAAAGACCCAACTAATAAGGGTGTTCCTTCCAGCAACTTTACCTGTTCAGCATGATTGGTTTTAG | 612 | 0.4837 | MSSRTARSQRRRKMNLELDLNRDPPAENVREDEEGPSTQQQQQQQQHQQQPQVPMIDVDAIDDDVVESSPRAFAEAKSNARRRVRRRTVVDVDLVDGTRGDPPNQTIINGNLYINLDTSSSSARENAPKSPERPKEPVFNCPICMGPLVEEMSTRCGHIFCKTCIKTAVAAQGKCPTCRKKVTKTQLIRVFLPATLPVQHDWF | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr9175g00001 | 203 | ProSitePatterns | Zinc finger RING-type signature. | 156 | 165 | IPR017907 | - | |
| Mupr9175g00001 | 203 | PANTHER | ELFLESS, ISOFORM B | 3 | 195 | - | - | |
| Mupr9175g00001 | 203 | SMART | ring_2 | 141 | 178 | IPR001841 | - | |
| Mupr9175g00001 | 203 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
| Mupr9175g00001 | 203 | MobiDBLite | consensus disorder prediction | 10 | 34 | - | - | |
| Mupr9175g00001 | 203 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 199 | IPR013083 | - | |
| Mupr9175g00001 | 203 | Pfam | Zinc finger, C3HC4 type (RING finger) | 140 | 178 | - | - | |
| Mupr9175g00001 | 203 | MobiDBLite | consensus disorder prediction | 35 | 52 | - | - | |
| Mupr9175g00001 | 203 | ProSiteProfiles | Zinc finger RING-type profile. | 141 | 179 | IPR001841 | - | |
| Mupr9175g00001 | 203 | SUPERFAMILY | RING/U-box | 140 | 185 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr9175g00001 | Mupr-Chr9175 | 5668 | 11227 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mupr9175g00001 | 4 | 195 | C3H Transcription Factor Family | AT5G48655 | 46.078 | 1.41e-44 | 145 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mupr9175g00001 | K22651 | - | gmx:100778432 | 244.588 |