LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr9056g00003	ATGCTCCATTCTGGGAACAAATACTGCGCTGATTGTGGAACTCCAGAGCCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGTCTAGGAGTCCACATATCAAAGGTTCTATCACTGAAGCTAGATGAGTGGACAGATGAACAAGTTGATGCATTAGCAAAGATGGGTGGAAATACATTATTAAATAAGAAGTACGAAGCTTGCCTCCCAAGTAACATAAAAAAACCAAAACCATATTCATCCATTGAGGACCGCTCCGAGTTTATTCGGAGAAAATATGAGCTGCAACAATTTATGGAGAGTGATAACAATCTGTCATGCGCCATTATCCCTTCTCAAGGAAGAAGTATATCACTTGCTCAGAGCAGCAATTCATACTACAATGTGATTATGGACAAGAAACCATCTGAAAAACATCCAAACAGACATCGTATTGGCCACGCATTCCGAAATAGCTGGGGAAGAAAAGATACTGAGCACAACAAGGCTACAAAGAAGAGTACCTCTTTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTAATGTGGTTAAAGGCACTCACCTAGCCGTTCGAGATGTAATGACTAGTGACCCTTATGTCATCATTTCTTTGGGTCACCAATCAGTAAAAACACGTGTCATAAAGAACAATTTGAATCCAGTCTGGAATGAAAGCCTAATGCTATCAATTCCAGATAACATTCCTCCTCTTAAAGTGCTAGTGTATGACAAGGATACATTTTCAACTGATGATTTTATGGGGGAGGCTGAAATAGACATTCAACCTCTAGTTATAGCTGCAAAGGCCTACGAGAAATCAAACATCAATGAGTCCATGCAGCTTGGGAAATTTGTAGCAAGCAAGGACAACACCCTTGTTAGAGATGGCATCATCTCCCTTGAAGATGGGAAGATTAAACAGGAAATCTCAGTGAGGCTACAGAATGTTGAGAGAGGTGAGCTGGAGATTGAGCTT	1011	0.4036	MLHSGNKYCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALAKMGGNTLLNKKYEACLPSNIKKPKPYSSIEDRSEFIRRKYELQQFMESDNNLSCAIIPSQGRSISLAQSSNSYYNVIMDKKPSEKHPNRHRIGHAFRNSWGRKDTEHNKATKKSTSLAGMVEFVGLIKVNVVKGTHLAVRDVMTSDPYVIISLGHQSVKTRVIKNNLNPVWNESLMLSIPDNIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVIAAKAYEKSNINESMQLGKFVASKDNTLVRDGIISLEDGKIKQEISVRLQNVERGELEIEL	337

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr9056g00003	337	SUPERFAMILY	ArfGap/RecO-like zinc finger	3	109	IPR037278	-
	Mupr9056g00003	337	ProSiteProfiles	C2 domain profile.	171	286	IPR000008	-
	Mupr9056g00003	337	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	2	337	IPR044518	GO:0005096\|GO:0005543
	Mupr9056g00003	337	Pfam	Putative GTPase activating protein for Arf	4	111	IPR001164	GO:0005096
	Mupr9056g00003	337	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	1	116	IPR001164	GO:0005096
	Mupr9056g00003	337	Gene3D	C2 domain	187	336	IPR035892	-
	Mupr9056g00003	337	SMART	arf_gap_3	1	116	IPR001164	GO:0005096
	Mupr9056g00003	337	Pfam	C2 domain	189	275	IPR000008	-
	Mupr9056g00003	337	CDD	ArfGap	5	103	-	-
	Mupr9056g00003	337	FunFam	stromal membrane-associated protein 1 isoform X1	1	114	-	-
	Mupr9056g00003	337	SMART	C2_3c	189	284	IPR000008	-
	Mupr9056g00003	337	Gene3D	Arf GTPase activating protein	1	116	IPR038508	-
	Mupr9056g00003	337	CDD	C2_ArfGAP	187	331	-	-
	Mupr9056g00003	337	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	185	279	IPR035892	-
	Mupr9056g00003	337	PRINTS	HIV Rev interacting protein signature	46	67	IPR001164	GO:0005096
	Mupr9056g00003	337	PRINTS	HIV Rev interacting protein signature	25	42	IPR001164	GO:0005096
	Mupr9056g00003	337	PRINTS	HIV Rev interacting protein signature	6	25	IPR001164	GO:0005096
	Mupr9056g00003	337	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	186	337	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr9056g00003	Mupr-Chr9056	24116	28903	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr9056g00003	1	337	C2H2 Transcription Factor Family	AT4G21160	47.478	6.70e-113	329

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr9056g00003	K12486		-	gmx:100789552	610.527