Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9032g00001 ATGTCTCCTCCCACCGGGGAAGCCGATAAATTGTTAGATTTGTACATCTACGATTATCTCATGAAGAGACAATTACATACTTCTGCAAAAGTGTTTCAGGCTGAAGGAAATGTTCCACAGGCTACTGTTGACTCACCTACTGGTTTTCTCTTTGAGTGGTGGTCTGTCTTCTGGGAGATGTATATTGCCAGGGCAAAACAGAAGTTCTTAGAATCAACAGCATACAACAAGAACCAACAAATTAAGGCTCGTTTAATGCAGAAGCAACAAGAGCCAGGGCTTCAGAATACAAACCAGAATCAACAAATGCAACCGTTATTGCAAAGACATGCTCAGCAGCAGCAGCGTCTGGGTGGAACTCAACTTATTAGTGGCAGTGCTAGCTGTCCTATTAGCAATGATCCTTTGATGAGGCAGAACCGGGCAACTTCTTGTGCTATGGCAACAAAAACATATGAGGACAGGTTGAAGCTTCCACTTCAGAGAGATGCTTTAGATGATAAGCAGAAAGTAATTGATGATGTTGCTCAGCTTCTAAATCCGAACTATGCCTTATTGTCGAAAGCAGCAGCAACAACTAATGAACAGGCTACAGGACAGACATTACTCAGTGCACCTCTGAACCAGAAACTTTCAGGCTCTATACAAGACATAAAGAGTGATATGAATGCAATGATGAGATCTCAAGCTGTTGATCCAGAAGGATCCTTTCTCGGTTCTCATGGTTCAAATCAAGGTGGTAGCAATTTGACTCTGAAAGGATGGCCTCTAGCAGGACTGGATCAGCTTCGCTCAGAATTTCTCCAGCCACATAATTTGATGCAGTCTCCGGAATCTTTCAATCAACTTTCTCTACGCCAGCAACTTATGCTTCAGGCACAACAAAATTTGATTTCTCCTTCTGCCAGTGATTTTGAGAGCAGAAGACATAGGATGCTTTTGAATAATCAAAACATGGGTCTTGTGAAAGATGGCCAATCAAATTCTGTAGGTGATTTAATTCCCAATTATGTATCACCTGCACAAGTTGGTTCCCCAGTTGTGCCCCATCCAGACACAAATATGCTCCTCAAGCAACAAATTCCAAAGAGTAGTCAGCAGCTTCAACAATATTCACAGCATCCTCTTTCAAGCCAGCAGTCTGAGAGTCTCCAGCAGCAAGAAAAAAATAGTCCTGGAAGCATGGCAGTGGAGGGCAATGTGTCCAGTACCTTACAAGGAAATGACCAGGCTTCCAAAGGTAAAACTGGGCGAAAGCGAAAGCAGGCATCATCTTCAGGTCCTGCCAATAGCTCTGGAACTGCAAACACCACAGGACCACCTATCAGTTCACCTTCAACACCATCTTCACAAACACCTGGAGACATGATGACAGTGTCAACTCTGCAACAGAGTGTTCCTTCCTCAAAGTCATCATTTATGTTTGGTACTGATGGTTTGGGCTCACTTACGTCAGCACAGAATCAATTGGCTGATTTGGATCACCTTGTGGGTGATGGATGTTTGGGTGACAATGTCGAGTCATTCTTATCTCCCGATGCTACAGATGTTAGAGAAAAAGTTGGCAAAGAAATCTCATTCAAGGAGATCAAGCATATAATGGCAAGTTCAGCCAAAGTTGAGTGTTGTCACTTCTCATCAGATGGAAATCTGTTTGCTACAGGTGGCCATGATAACAAGGCTTCTTTGTGGTGCACAGAATTGTTTAACCTGAAATCTACACTTGAAGAGCACAATGAACGGATAACTGATGTTCGATTTTGTCCAAGCATCTTACGTGTTGCCACATCCTCAGCCGACAAAACTGTCAGGGTTTGGGATGTTGATAATTTCAATTAG 1839 0.4301 MSPPTGEADKLLDLYIYDYLMKRQLHTSAKVFQAEGNVPQATVDSPTGFLFEWWSVFWEMYIARAKQKFLESTAYNKNQQIKARLMQKQQEPGLQNTNQNQQMQPLLQRHAQQQQRLGGTQLISGSASCPISNDPLMRQNRATSCAMATKTYEDRLKLPLQRDALDDKQKVIDDVAQLLNPNYALLSKAAATTNEQATGQTLLSAPLNQKLSGSIQDIKSDMNAMMRSQAVDPEGSFLGSHGSNQGGSNLTLKGWPLAGLDQLRSEFLQPHNLMQSPESFNQLSLRQQLMLQAQQNLISPSASDFESRRHRMLLNNQNMGLVKDGQSNSVGDLIPNYVSPAQVGSPVVPHPDTNMLLKQQIPKSSQQLQQYSQHPLSSQQSESLQQQEKNSPGSMAVEGNVSSTLQGNDQASKGKTGRKRKQASSSGPANSSGTANTTGPPISSPSTPSSQTPGDMMTVSTLQQSVPSSKSSFMFGTDGLGSLTSAQNQLADLDHLVGDGCLGDNVESFLSPDATDVREKVGKEISFKEIKHIMASSAKVECCHFSSDGNLFATGGHDNKASLWCTELFNLKSTLEEHNERITDVRFCPSILRVATSSADKTVRVWDVDNFN 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9032g00001 612 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 575 612 - -
Mupr9032g00001 612 SMART WD40_4 526 565 IPR001680 GO:0005515
Mupr9032g00001 612 SMART WD40_4 568 607 IPR001680 GO:0005515
Mupr9032g00001 612 Gene3D - 521 612 IPR015943 GO:0005515
Mupr9032g00001 612 Pfam LisH 10 36 IPR006594 GO:0005515
Mupr9032g00001 612 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Mupr9032g00001 612 ProSiteProfiles Trp-Asp (WD) repeats profile. 533 564 IPR001680 GO:0005515
Mupr9032g00001 612 PANTHER TRANSCRIPTION ACTIVATOR MSS11 6 91 - -
Mupr9032g00001 612 MobiDBLite consensus disorder prediction 421 470 - -
Mupr9032g00001 612 ProSitePatterns Trp-Asp (WD) repeats signature. 594 608 IPR019775 -
Mupr9032g00001 612 MobiDBLite consensus disorder prediction 361 412 - -
Mupr9032g00001 612 Pfam WD domain, G-beta repeat 537 564 IPR001680 GO:0005515
Mupr9032g00001 612 Pfam WD domain, G-beta repeat 571 607 IPR001680 GO:0005515
Mupr9032g00001 612 SMART Lish 8 40 IPR006594 GO:0005515
Mupr9032g00001 612 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 612 IPR001680 GO:0005515
Mupr9032g00001 612 MobiDBLite consensus disorder prediction 361 470 - -
Mupr9032g00001 612 SUPERFAMILY WD40 repeat-like 526 610 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9032g00001 Mupr-Chr9032 739 6748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9032g00001 540 611 Miscellaneous Gene Families AT5G08390 34.722 9.40e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mupr9032g00001 WD40 0.00028 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9032g00001 - - gmx:100801265 903.279