LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr8975g00001	ATGGGAAGACAACCTTGTTGTGACAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAGCTCATCAGCTTCATTCTCACTAATGGCCAATGTTGTTGGAGAGCTGTCCCTAAGCTTGCAGGACTATTAAGGTGTGGGAAGAGTTGCAGACTCAGGTGGACAAACTACCTTAGGCCAGACTTAAAGAGAGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATAAAAAACCATTGGAACACCCACATAAAGAAAAAGCTCAAGAAAATGGGCATTGATCCTGTGACCCACAAACCACTCCCTAATGCAACTGAACAAACCCAAAATCAACAACAACTACACCAACCAGTAGAAGAACAGCAGAACCAACAACCTTTGCAAGTTGACCTTGACCCCAAAGTTGACCCAAATAAGGAGCCAGAGACTTCATTGGAGTCATCAACACTCAATGAAGATAAAATTGTAATGTCCCCATTTGACACAATGGAACCAATGAATGGTTTCTGCACAGATGAAGTTCCAATAATAGAACCTGATGAGATTCTAATGCCTTGTGCTCCTTCCTCATCATCCACCTCTACATCATCTTCAAATTCAACAAACTTCCTTGAAGACCTGCAGCTACCAGATTTTGAATGGTCTTGTAATTACAATGATAATAACGACCACAACACCACCACCATGACCTTGTGGGATGATGACTTTATTAGCAATCTTAATAATTGGCTGATTAATGAAGATGATGATAGTGATGGAAACCAAGTGTTTGATGCTCCTCTCACTCACTTCTCTAGAATGCTCATGGATTCAGAATCTTGGGTACCTGGCTTGTTTTGA	924	0.4145	MGRQPCCDKVGLKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLPNATEQTQNQQQLHQPVEEQQNQQPLQVDLDPKVDPNKEPETSLESSTLNEDKIVMSPFDTMEPMNGFCTDEVPIIEPDEILMPCAPSSSSTSTSSSNSTNFLEDLQLPDFEWSCNYNDNNDHNTTTMTLWDDDFISNLNNWLINEDDDSDGNQVFDAPLTHFSRMLMDSESWVPGLF	307

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr8975g00001	307	MobiDBLite	consensus disorder prediction	158	177	-	-
	Mupr8975g00001	307	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Mupr8975g00001	307	MobiDBLite	consensus disorder prediction	122	153	-	-
	Mupr8975g00001	307	CDD	SANT	16	61	IPR001005	-
	Mupr8975g00001	307	FunFam	MYB transcription factor	11	67	-	-
	Mupr8975g00001	307	Gene3D	-	11	67	-	-
	Mupr8975g00001	307	FunFam	MYB-related transcription factor	70	130	-	-
	Mupr8975g00001	307	Gene3D	-	70	154	-	-
	Mupr8975g00001	307	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Mupr8975g00001	307	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Mupr8975g00001	307	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	242	-	-
	Mupr8975g00001	307	SMART	sant	66	114	IPR001005	-
	Mupr8975g00001	307	SMART	sant	13	63	IPR001005	-
	Mupr8975g00001	307	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Mupr8975g00001	307	MobiDBLite	consensus disorder prediction	129	153	-	-
	Mupr8975g00001	307	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Mupr8975g00001	307	Pfam	Myb-like DNA-binding domain	71	111	IPR001005	-
	Mupr8975g00001	307	CDD	SANT	74	112	IPR001005	-
	Mupr8975g00001	307	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr8975g00001	Mupr-Chr8975	1669	3790	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr8975g00001	1	243	MYB Transcription Factor Family	AT1G66230	63.710	1.19e-99	292

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Mupr8975g00001		Myb_DNA-binding	1.1e-12	CL0123