Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr892g00007 ATGGAGAACAACCTCTACGACTTTTACTCTTCAGCCACTTGCTCAGCCCAGTCAACAATGGCTCCACCTCCGCCGACTAAGTCCGCCTTTGGGAAGGAGGAGGATGTTTCAAAAGCACTTCGTGCTAAAGTTGCTTCTCATCCTTATTTTCCTCACCTCCTCCATGCCTACATCGATTGCCATAAGGTGGGAGCGCCGCAAGATGTGGCACAGCTATTAGAAGGAATTAAAGAAGAGCACAGTGGGGTGTGTCAGATATCTGATGGCTTCTTGGGTGCTGATCCCGAGCTCGATGGTTTCATGGGAACGTTTTGTGATTTATTGGTGAAGTATAAATCGGATCTTTCGAGGCCCTTTGACGAGGCAACCATGTTCCTCAGCCACATGGAAACGCAGCTTCACTCCATCTGCAACGACAACGACCTTGCTGCCATAAACAACACTCCTCAATCTGATGAAGTTACTGTATCACCTCGAAAAGATCTTAGTAGGGTGGAGAAAGAGGCAATTGAGTGCAAGAGGATGAATGAAGTTCAAGAGCTGAAGGATAACCTTCTACGTAGATATAGCGGTTATATTACTAATCTGAAGCAAGAATTTTCCAAAAAAAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAGCAAATCTTACTTGCATGGTGGAATATTCACTTTAAATGGCCATACCCAACGGACGCAGATAAGGTTGCCTTAGCTGAATGGAGTGGTTTAGACCAGAAGCAAGTAAATAATTGGTTTATAAACCAAAGGAAGCGCCATTGGAAACCAACAGGGGAAATGCACGCTGCAATTTTGGATGGTCTCTATGGACCCCTGCAC 840 0.4488 MENNLYDFYSSATCSAQSTMAPPPPTKSAFGKEEDVSKALRAKVASHPYFPHLLHAYIDCHKVGAPQDVAQLLEGIKEEHSGVCQISDGFLGADPELDGFMGTFCDLLVKYKSDLSRPFDEATMFLSHMETQLHSICNDNDLAAINNTPQSDEVTVSPRKDLSRVEKEAIECKRMNEVQELKDNLLRRYSGYITNLKQEFSKKKKKEKLPKEAKQILLAWWNIHFKWPYPTDADKVALAEWSGLDQKQVNNWFINQRKRHWKPTGEMHAAILDGLYGPLH 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr892g00007 280 Pfam ELK domain 180 201 IPR005539 GO:0003677
Mupr892g00007 280 Gene3D - 197 270 - -
Mupr892g00007 280 ProSitePatterns 'Homeobox' domain signature. 238 261 IPR017970 GO:0000981|GO:0006355
Mupr892g00007 280 SMART ELK_2 180 201 IPR005539 GO:0003677
Mupr892g00007 280 SMART HOX_1 202 267 IPR001356 GO:0003677
Mupr892g00007 280 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 74 268 - -
Mupr892g00007 280 SMART KNOX1_2 38 82 IPR005540 GO:0003677|GO:0005634
Mupr892g00007 280 Pfam Homeobox KN domain 220 259 IPR008422 GO:0003677|GO:0006355
Mupr892g00007 280 ProSiteProfiles 'Homeobox' domain profile. 200 263 IPR001356 GO:0003677
Mupr892g00007 280 ProSiteProfiles ELK domain profile. 180 200 IPR005539 GO:0003677
Mupr892g00007 280 SMART KNOX2_2 87 138 IPR005541 GO:0003677|GO:0005634
Mupr892g00007 280 CDD homeodomain 215 263 IPR001356 GO:0003677
Mupr892g00007 280 Pfam KNOX2 domain 92 137 IPR005541 GO:0003677|GO:0005634
Mupr892g00007 280 SUPERFAMILY Homeodomain-like 201 270 IPR009057 -
Mupr892g00007 280 Pfam KNOX1 domain 40 79 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr892g00007 Mupr-Chr892 53717 63114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr892g00007 39 277 Homeobox Transcription Factor Family AT1G23380 53.689 3.66e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mupr892g00007 KNOX2 3.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr892g00007 - - ccaj:109811765 444.506