Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8906g00002 ATGGAGGGAACTTCATCGGCATCAATGACTTTAACCTCTACTCCTGAAGATCTTTATCTAGTTGACGATTTCTACTTTTCAGCCCTTTACGATGCTGAAGAAATATTTCCAATCTCCGATGAGAAATATGCGGAAGAGCTACAACTACAAGAAACCCTTTATTCCTCTGCAATTTCGAGTACTAGAGTTAACAACCAAGTTATCCAAGTGGATGTAGATGTTGACGGTGACACCCCTTCGAGAACCTTCAAGAGGAAGCAGAAAGAGATCGGTGAATCTTCCCAAGTTCGCTGTGGTATTTGCATGGATGGCAAACCTGGTGAAGAAATGTTCAGCAACCAAAACTGTTCTCACGCTTTCTGTAATGATTGTATTGGGATATATGTGGCTTCAAAGATTCAGGAGAATATATCAATGGTCAAATGCCCTGACCCCAAATGCACGGGGGTTCTGGAGTCTCAGTATTGTCGTTCAATTATCCCTGAGGAAGTGTTTGATCGATGGGAAAATGCCCTTTGTGAGAATTTGGTGCTTGGATCACAAAAATTTTATTGCCCTTTTAAGGATTGCTCAGCTATGTTGATATCTGATGCTGAGGAAGTTGTGACTTCTTCAGAATGTCCATATTGTAACAGACTGTTTTGTGCACAGTGCAAGGTTTCTTGGCATGCAGGAATAGACTGTATGGAGTTTCGGAGCTTGAAGCAGTATGAGAGAGAGAGGGAAGATCTAATGGTAATGGAACTTGCCAAGGACAAGAGTTGGAGAAGATGTCCAAAATGCAATTTCTATGTGGAAAAATCTGGTGGATGTTCACATATTTCTTGCAGATGTGGCAATGAATTTTGCTATGCCTGTGGATCTTCTTGGACCCTTCACGATACTGAAGAAATATTTCCAGTCTCGTATGAGAAAAATAAAGAAAAGCTAAAACTACAAGAAGCATTATATTACTCTCCAATGTCGGGTACTGAAGCTAAAAACGGAGTTATCCAAGTGGGTGACACCCCTTTGGGAACCCTCAAGAGGAATCAGAAAGGGACCGATGAATCTTCCCAAGTCTACTGTGGTATTTGCATGGATGGCAAACCTGGTGAAGAAATGTTCAGAAACCAAAACTGTCTTCACTCTTTCTGTAATGATTGTATTGGGATGTATGTGGCTACAAAGATTAGGGAGAATATATCAATAATCAAATGCCCTGACCCCATATGCAGGGAGATTCTGGACTCTCAGTACTGTCGTTCAATTATCCCTAAGGAAGTGTTTGATCGATGGCAAAACACCCTTTGTGAGAATTTGGTGCCTGGATCACAAAAATTTTATTGCCCTTTTAAGGATTGCTCGGCTATGTTGATATATGATGCTGAGGAAGTTGTGACTTCTTCGGAATGTCCACATTGTAACAGACTATTTTGTGCACAGTGCAAGGCTCCTTGGCATGCAGGAATAGACTGTAGGGAGTTTCAGAGCATGCAGCAGCACGAGAGAGCGAGGGAAGATCTAATGCTAATGGAACTTGCTAAGAACAAACGTTGGAAAAGATGTCCAGAATGCAATTTCTTTGTGGAAAAAACTGGTGGATGTTCAGAAATTACTTGCAGCTTT 1608 0.4136 MEGTSSASMTLTSTPEDLYLVDDFYFSALYDAEEIFPISDEKYAEELQLQETLYSSAISSTRVNNQVIQVDVDVDGDTPSRTFKRKQKEIGESSQVRCGICMDGKPGEEMFSNQNCSHAFCNDCIGIYVASKIQENISMVKCPDPKCTGVLESQYCRSIIPEEVFDRWENALCENLVLGSQKFYCPFKDCSAMLISDAEEVVTSSECPYCNRLFCAQCKVSWHAGIDCMEFRSLKQYEREREDLMVMELAKDKSWRRCPKCNFYVEKSGGCSHISCRCGNEFCYACGSSWTLHDTEEIFPVSYEKNKEKLKLQEALYYSPMSGTEAKNGVIQVGDTPLGTLKRNQKGTDESSQVYCGICMDGKPGEEMFRNQNCLHSFCNDCIGMYVATKIRENISIIKCPDPICREILDSQYCRSIIPKEVFDRWQNTLCENLVPGSQKFYCPFKDCSAMLIYDAEEVVTSSECPHCNRLFCAQCKAPWHAGIDCREFQSMQQHERAREDLMLMELAKNKRWKRCPECNFFVEKTGGCSEITCSF 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8906g00002 536 SUPERFAMILY RING/U-box 437 490 - -
Mupr8906g00002 536 CDD BRcat_RBR_unk 437 489 - -
Mupr8906g00002 536 SUPERFAMILY RING/U-box 239 292 - -
Mupr8906g00002 536 SUPERFAMILY RING/U-box 92 175 - -
Mupr8906g00002 536 ProSitePatterns Zinc finger RING-type signature. 116 125 IPR017907 -
Mupr8906g00002 536 CDD BRcat_RBR_unk 179 231 - -
Mupr8906g00002 536 ProSitePatterns Zinc finger RING-type signature. 374 383 IPR017907 -
Mupr8906g00002 536 ProSiteProfiles Zinc finger RING-type profile. 356 401 IPR001841 -
Mupr8906g00002 536 Gene3D - 488 535 - -
Mupr8906g00002 536 Gene3D - 226 327 - -
Mupr8906g00002 536 SUPERFAMILY RING/U-box 350 436 - -
Mupr8906g00002 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 437 IPR013083 -
Mupr8906g00002 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 179 IPR013083 -
Mupr8906g00002 536 Gene3D - 441 487 - -
Mupr8906g00002 536 CDD Rcat_RBR_unk 255 290 - -
Mupr8906g00002 536 Pfam IBR domain, a half RING-finger domain 426 486 IPR002867 GO:0008270
Mupr8906g00002 536 Pfam IBR domain, a half RING-finger domain 248 293 IPR002867 GO:0008270
Mupr8906g00002 536 Pfam IBR domain, a half RING-finger domain 167 228 IPR002867 GO:0008270
Mupr8906g00002 536 SUPERFAMILY RING/U-box 497 535 - -
Mupr8906g00002 536 FunFam RBR-type E3 ubiquitin transferase 93 179 - -
Mupr8906g00002 536 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 73 302 IPR031127 GO:0004842|GO:0016567
Mupr8906g00002 536 FunFam RBR-type E3 ubiquitin transferase 351 437 - -
Mupr8906g00002 536 ProSiteProfiles TRIAD supradomain profile. 94 305 IPR044066 -
Mupr8906g00002 536 SMART ring_2 356 405 IPR001841 -
Mupr8906g00002 536 SMART ring_2 98 210 IPR001841 -
Mupr8906g00002 536 SUPERFAMILY RING/U-box 174 232 - -
Mupr8906g00002 536 ProSiteProfiles Zinc finger RING-type profile. 98 146 IPR001841 -
Mupr8906g00002 536 SMART ibrneu5 238 295 IPR002867 GO:0008270
Mupr8906g00002 536 SMART ibrneu5 424 486 IPR002867 GO:0008270
Mupr8906g00002 536 SMART ibrneu5 166 228 IPR002867 GO:0008270
Mupr8906g00002 536 ProSiteProfiles TRIAD supradomain profile. 352 536 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8906g00002 Mupr-Chr8906 3919 14482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8906g00002 329 534 C3H Transcription Factor Family AT2G19610 25.688 3.43e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8906g00002 K11975 - gmx:100815626 453.366