Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8906g00001 ATGGCTTCTTCTGGAAGAAATACTGAAAGAAATTCAAATACAAAGAGGAGAAAGATTGAGATGAAGGAAGTGGAACAATTAAACAAGCGTCATGTGACCTTCTCCAAACGTAAACTAGGACTCTTCAACAAACTCACAGAGCTCTCTCTTCTATGTCAAGTAGAAACGGCCATGATCGTGACCTCCCAAAATGGCAAGCTATATACATGTGGCTACCCCGACACTGACGTTGTCATCCATCGCTACCTAGTCGGAGGGCTTCCCCCACACCGTAACGAGGCAAGGAAAAAGAAACAACAAGAGTTAGTTGAAAGCCTAAGACTGGAATACGAGGCCGTTCATAATCGCTTGAAAGAAGAGAAAGAGCGTCTTCAAGCGATCACCATAGAGACACAAAAGAGTAATTTCTACTTTTCTTCTTGGTGGAATCTCTCCACTAACCATATGGATTTGGAGAATCTTGAGCAATTCAAGACCTCCTTGGAACATTTGAAGTTTAATCTCGTTGGGGCAGTGCAAGAGAAGCAGTTAAATTCAATGCCACTGGCTATAGTTCCACCAATGCCATCTATGAGTTTAATGCTTATAGCATAA 594 0.4209 MASSGRNTERNSNTKRRKIEMKEVEQLNKRHVTFSKRKLGLFNKLTELSLLCQVETAMIVTSQNGKLYTCGYPDTDVVIHRYLVGGLPPHRNEARKKKQQELVESLRLEYEAVHNRLKEEKERLQAITIETQKSNFYFSSWWNLSTNHMDLENLEQFKTSLEHLKFNLVGAVQEKQLNSMPLAIVPPMPSMSLMLIA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8906g00001 197 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Mupr8906g00001 197 Coils Coil 96 130 - -
Mupr8906g00001 197 Gene3D - 27 112 IPR036879 GO:0003677|GO:0046983
Mupr8906g00001 197 FunFam Agamous-like MADS-box protein AGL62 26 110 - -
Mupr8906g00001 197 SUPERFAMILY SRF-like 15 83 IPR036879 GO:0003677|GO:0046983
Mupr8906g00001 197 PANTHER MADS BOX PROTEIN 16 168 - -
Mupr8906g00001 197 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Mupr8906g00001 197 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Mupr8906g00001 197 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Mupr8906g00001 197 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Mupr8906g00001 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8906g00001 Mupr-Chr8906 559 1311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8906g00001 16 165 Type I MADS-box Gene Family AT5G60440 34.416 6.45e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr8906g00001 SRF-TF 3.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8906g00001 - - gmx:100817750 253.447