Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8879g00002 ATGGATGGGCGGCGACATTCAGTTGATATTCCAATTTCTAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCATTGAGGGATCCGTCAACTAATTCTATGAGCAAGCTATCTTCTTTGGTTGATAATGTGCACTGGGAAAACGGTTCTAGTAATGACATTTCCCTGCGGTTTTCGGATGCCGCTCGGCCGTGTGATTCTGATGACAATGCTGCTTTCAGATCAAGGAATTTAGGTTTTAAGGGACAAAGGGAGCACAATGATGCTGATTTTGGATTGAACTCTGGTCTGTGGAACTCAAGGCTGAAGCCTAGTGTGATGTCATGTCAGGCTGGCCAACAAGATGGTGAACTAGTTTACTCTAAACCTAATCTGCAGTGCATTTCTGGAAATAAATCGCCAAGTGAAAGCTGTGGTAGCAACCATGGGGATAGAGGATTGGACATGGCTTGTATTGTGCTTCCAAGTAATAATTTCAAAGATGGGGATTCATGCTATGTAGCAACTGCTAGATCATCTCAATTAGGGAGAATAGATTGCTCTAAGTCAGCCAAAAAGTCTCTACGCAAGAATCAAGTGAAACCATCAGAGATAGTAGGAGGTATTGCTAGCCATGTAGGTAGTCCATGCCCTTCTGGTTATGATGCTTTCTCGCCATATAGTGCTTCGGTAGGTATAAATCAAGATGTTGATGTTTTAGATAATAATGATAATGGATGTGGAATAAGCTGTTGTTGGTCAAAATCTCCAAGGTTTAGAGAGTCAAATCTGTATTGTGAGATAGAAGACCGTCCCTTGATATCGAAGCGTGTTGATGAGACAGATCTTCATGCACACAGAAGCATGAGACACAATGGTGGTGGGATTAGTCCAAATTTAGAAACTCCTAGAAGTTTATCGATGAAATTCAGGCCTAAATCATTTAGTGATTTGGTGGGACAAAATGTGGTAGTAAGGTCTCTTCTGGGTGCCATCTCCAGAGGAAGGATAACATCATTTTATCTCTTCCACGGTCCACGTGGCACCGGCAAGACGTCTGCCTCTAGGATATTTGCTGCTGCACTGAATTGCGTCTCTGTTGAGGAGCAAAGGCCATGTGGCCTGTGCAGAGAATGTGTTATATTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATCGTACAGACCAGGTTAAATCCCTTGTTAAGAATGCAAGCATCCCTCCAGTTTCCTCACGTTTTAAGGTTTTCATCATTGATGAGTGCCAGTTGTTGAATGCGGAGACATGGGCAAGCATTTCAAGTAGCCTAGAGAACCTTTCTCAACAAGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCGAAGCGCAGTTTCCCGGGCGCAGAGGTATCACTTTCCCAAGGTTAAAGATGCTGACATTGTATGCAGATTGGAAACAATTTGTGCCGAAGAAGGGCTTGATTTTGAACAGGATGCTTTGGACTTCATTGCTGCAAAATCATGTGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTTGGTAAAAAGATTAATATTTCTTTAGCATACGAGCTTACTGGGATCGTTTCTGACGACGAGTTGCTTGATTTGCTGGATCTGGCTTTGTCATCTGACACTTCAAATACAGTTATAAGAGCTCGGGAGCTGATGAGATCGAGGATAGATCCTTTGCAACTTGTATCACAGCTCGCGAATCTCATTATGGACATCCTTGCAGGGAAATGTGAAAATGGTGGTTCTGAAGTCAGAACGGAAGCTGATCTGCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGTTAAGAATCTCGAAGAATCAAACAACATGGTTCACCGTTGCTCTCCTACAGTTAAGCTCTGGAGATTATCCATCTGTGGATGCAAATGATACCAAGTTGAGTCTGAGAGGTGAATGCAATGGAGGTCAAAGCTTGGAACACTTTGCTACAGGCCTATGTGATAACAAGTCATACAGATTAGGAGTGCCAGAGGATCACAAAGGAACACTGGATTCCATTTGGTATAAAGCTACAGAGATGTGTCATTCTAGTCAGCTCAAAACTTTTCTCAGGAAGAAGGGGAAGTTGTCTTCACTTCATGTTGATCGCAGTCTTGCTATTGCTGAATTGGAGTTCCACCATCGCCACCATGTATCCAAGGCTGAGAAGTCATGGAAAGTGATAGCAAGTTCCTTGCAGTTCATATTGGGTTGCAACGTTGAGTTGAGGATCACTTATACACCTTGTGATTCTGATTCTAAGTATGCCAAACTGAGATCATCTTTCAGTATCTTCAGTTGTTCGCGCAGAATTCGACAACACAAGTCATTGTCATCTAATGAACAAGGAAGTGAATCAGATTATGCTGATCATACCTCTGAAAATCCCATGATGAAGGACAGAACTTCTACCTCTGATTGTGGAATGGATGTTGTTGTAACAACCTTGAGGAGTTGTGAAGGGAATTTGCTGAGCACAGGAGAAAGATTTTTGAATAGGTCATTTCAAGAGACTAAGGAAGAGGGATGCAATTGTGCACATCTTGATACATCAACCCTCGATTCAGATAATCACTCTAACTGTTTTCCTAAAACTCTTTGGCTTCAAAAGAAGTTCCGTTCTTCATATTCATCCAAGTTGAGCTTCCAGGGTATTCAACAACAGAAAGATTTTGTTTTATCTGTCCCGAAGTGTACATGTTCTGGGACATATACCTATGCTAACGGACCCTGCATTTTTTCCAGCAGTTGTAAGAACTGCACCAAAGCCTCTTAG 2826 0.4204 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLSSLVDNVHWENGSSNDISLRFSDAARPCDSDDNAAFRSRNLGFKGQREHNDADFGLNSGLWNSRLKPSVMSCQAGQQDGELVYSKPNLQCISGNKSPSESCGSNHGDRGLDMACIVLPSNNFKDGDSCYVATARSSQLGRIDCSKSAKKSLRKNQVKPSEIVGGIASHVGSPCPSGYDAFSPYSASVGINQDVDVLDNNDNGCGISCCWSKSPRFRESNLYCEIEDRPLISKRVDETDLHAHRSMRHNGGGISPNLETPRSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRITSFYLFHGPRGTGKTSASRIFAAALNCVSVEEQRPCGLCRECVIFFSGRSKDVKEVDSVRINRTDQVKSLVKNASIPPVSSRFKVFIIDECQLLNAETWASISSSLENLSQQVVFVMITPDLDKLPRSAVSRAQRYHFPKVKDADIVCRLETICAEEGLDFEQDALDFIAAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENGGSEVRTEADLQKLNNALKILSETEKQLRISKNQTTWFTVALLQLSSGDYPSVDANDTKLSLRGECNGGQSLEHFATGLCDNKSYRLGVPEDHKGTLDSIWYKATEMCHSSQLKTFLRKKGKLSSLHVDRSLAIAELEFHHRHHVSKAEKSWKVIASSLQFILGCNVELRITYTPCDSDSKYAKLRSSFSIFSCSRRIRQHKSLSSNEQGSESDYADHTSENPMMKDRTSTSDCGMDVVVTTLRSCEGNLLSTGERFLNRSFQETKEEGCNCAHLDTSTLDSDNHSNCFPKTLWLQKKFRSSYSSKLSFQGIQQQKDFVLSVPKCTCSGTYTYANGPCIFSSSCKNCTKAS 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8879g00002 941 CDD HLD_clamp_pol_III_gamma_tau 470 533 IPR045085 -
Mupr8879g00002 941 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 298 723 - -
Mupr8879g00002 941 FunFam DNA polymerase III subunit gamma/tau 471 533 - -
Mupr8879g00002 941 NCBIfam DNA polymerase III subunit gamma/tau 297 635 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mupr8879g00002 941 MobiDBLite consensus disorder prediction 793 821 - -
Mupr8879g00002 941 Coils Coil 594 624 - -
Mupr8879g00002 941 MobiDBLite consensus disorder prediction 793 808 - -
Mupr8879g00002 941 SUPERFAMILY post-AAA+ oligomerization domain-like 534 636 IPR008921 GO:0003677|GO:0006260
Mupr8879g00002 941 Gene3D - 291 468 IPR027417 -
Mupr8879g00002 941 SMART AAA_5 329 472 IPR003593 GO:0016887
Mupr8879g00002 941 Pfam DNA polymerase III, delta subunit 313 470 - -
Mupr8879g00002 941 Gene3D - 471 533 - -
Mupr8879g00002 941 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 519 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8879g00002 Mupr-Chr8879 54142 58057 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8879g00002 288 618 Core DNA Replication Machinery Family AT1G21690 24.405 1.55e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8879g00002 - - gmx:100812040 1594.71