Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8879g00001 ATGACAACCACTCTACTCTCTTTGCTTTTCTTTCTCTTCTCGCTTCTCACTTCAACCCTCTCTTCACCAGTTCAAAACCCTGAATCCGTCGTACAAGAGGTAAACAGAAAAATCAATGGGTCAATGGCTAGGCCTAGGAGGAACTTGGGGTACCTGTCATGTGGTAGTGGCAACCCCATTGATGATTGTTGGAGGTGTGACCCGAATTGGGAGCAGAACAGGCAGAGGCTAGCAGATTGCGCAATTGGGTTCGGCAAGAACGCCATTGGGGGGAGGGACGGGAAGCTTTACGTGGTGGACGACGAAGGCGACGACGACCCGGTGAACCCGAAGCCGGGGACGCTCCGGCACGCCGTGATCCAAGACGAGCCTCTATGGATAATCTTCGCGAGAGACATGGTGATCACTCTAAAAGAAGAGCTCCTGATGAACTCCTTCAAAACCATCGACGGCAGAGGCGCCAGCGTGCACATCGCCGACGGTCCATGCATTACGATACAGTACGTGACCAACGTTATCATCCACGGGATTCACATACACGATTGCAAGCAGGGAGGGAATGCCATGGTGCGGGACTCCCCACGGCACTACGGGTGGAGGACCGTATCGGACGGCGATGGTGTTTCCATCTTCGGAGGAAGCCACGTGTGGGTCGACCATTGTTCTCTCTCCAACTGCAACGATGGCCTCATCGACGCCATCCATGGGTCCACCGCTATTACCCTCTCTAACAATTATATGACGCATCATGATAAGGTCATGTTGTTGGGTCACAGCGATTCTTACACCCAGGACAAGAACATGCAAGTCACTATTGCTTTCAACCACTTTGGTGAAGGCCTTGTTCAAAGAATGCCAAGGTGTAGGCTTGGTTATTTTCACGTGGTGAACAATGATTATACTCACTGGGAAATGTACGCCATTGGGGGAAGTGCTAATCCAACCATCAACTGCCAAGGCAACAGATTTGTTGCACCGGATGACAGATTCAGCAAAGAGGTGACAAAACGTGAAGATGCGCCCGAGAGTGAATGGCAGGATTGGAATTGGAGGTCAGAAGGGGACATGTTAGTAAACGGTGCGTTTTTCACTGCATCGGGTGCTGGAGCCTCCTCTAGCTATGCAAGGGCTTCTAGTTTAAGTGCGAGACCTTCTTCCCTTGTTGGTTCCATAACAACGGGTGCTGGTGCCCTAAGCTGTAAGAAAGTTTTGAGTTGCTCATGA 1224 0.5114 MTTTLLSLLFFLFSLLTSTLSSPVQNPESVVQEVNRKINGSMARPRRNLGYLSCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAIGGRDGKLYVVDDEGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVITLKEELLMNSFKTIDGRGASVHIADGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITLSNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINCQGNRFVAPDDRFSKEVTKREDAPESEWQDWNWRSEGDMLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALSCKKVLSCS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8879g00001 407 PANTHER PECTATE LYASE 18-RELATED 22 402 IPR045032 GO:0030570
Mupr8879g00001 407 Gene3D - 57 399 IPR012334 -
Mupr8879g00001 407 SMART amb_all 132 329 IPR002022 -
Mupr8879g00001 407 Pfam Pectate lyase 142 323 IPR002022 -
Mupr8879g00001 407 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Mupr8879g00001 407 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Mupr8879g00001 407 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Mupr8879g00001 407 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Mupr8879g00001 407 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Mupr8879g00001 407 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Mupr8879g00001 407 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Mupr8879g00001 407 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Mupr8879g00001 407 FunFam Pectate lyase 57 399 - -
Mupr8879g00001 407 SUPERFAMILY Pectin lyase-like 47 400 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8879g00001 Mupr-Chr8879 13081 15028 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8879g00001 6 406 Polysaccharide Lyase AT5G63180 79.803 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8879g00001 K01728 - gmx:100814679 745.732