Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8871g00001 ATGGTAAGAATATTGTTTGGCAAACATCCAACCACACAGAAGGAAGAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGGAAGGATCTGAGGGAATTGGGAGCAAAGGAAAGAAAGATGCAGGATATGGTGTGTGGATAGGGAGGGTCCAGCGTAGTAGCAGTGTACCTACAACACTACCCTCTGCTAACACAACACCCACTTTTCTCCCAACGCCAATAATTCAACTGCTGCAAGATAATGAAGATGATGGGCAGCAGCAGTCAGAATCACAAATGCAGTCCTCATCTGCCAATGGAATTTCTGATCCAGGTATTAGTACCCAGAATGTACAGTATGCAACACCTGGCCAACTTGGAACTGGGCATGGAATGGTACCACCTGTGTATCCATATCCAGATCCTTACTATAGAAGCATCTTTGCTCCCTATGATACACAACCTTATCCCCCACAAGCCTATAGTGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAATATCATGGTATATTAAGACGTAGACAATCCCGTGCGAGAGCTGAATCAGAAAATAAAGTTATAAGGAATAGAAAGCCATACTTGCATGAATCTCGACACAAACATGCACTGAGAAGACCAAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGACGAGAATCAGCATAATGATGTGGCATCAGCTGACAAATCACAATCCAATATCAACCTCAATTCTGATAAAAATGATCTTACTTCTTCAGATAGGACATCCTAA 831 0.42 MVRILFGKHPTTQKEEKKKKKKKKKKKKEGSEGIGSKGKKDAGYGVWIGRVQRSSSVPTTLPSANTTPTFLPTPIIQLLQDNEDDGQQQSESQMQSSSANGISDPGISTQNVQYATPGQLGTGHGMVPPVYPYPDPYYRSIFAPYDTQPYPPQAYSGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRARAESENKVIRNRKPYLHESRHKHALRRPRGCGGRFLNSKKDENQHNDVASADKSQSNINLNSDKNDLTSSDRTS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8871g00001 276 Gene3D - 180 241 - -
Mupr8871g00001 276 MobiDBLite consensus disorder prediction 1 42 - -
Mupr8871g00001 276 MobiDBLite consensus disorder prediction 83 115 - -
Mupr8871g00001 276 MobiDBLite consensus disorder prediction 236 250 - -
Mupr8871g00001 276 PRINTS CCAAT-binding transcription factor subunit B signature 183 205 IPR001289 GO:0003700|GO:0006355
Mupr8871g00001 276 PRINTS CCAAT-binding transcription factor subunit B signature 214 237 IPR001289 GO:0003700|GO:0006355
Mupr8871g00001 276 MobiDBLite consensus disorder prediction 14 28 - -
Mupr8871g00001 276 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 182 237 IPR001289 GO:0003700|GO:0006355
Mupr8871g00001 276 ProSiteProfiles NF-YA/HAP2 family profile. 180 240 IPR001289 GO:0003700|GO:0006355
Mupr8871g00001 276 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 33 275 IPR001289 GO:0003700|GO:0006355
Mupr8871g00001 276 SMART cbf3 179 240 IPR001289 GO:0003700|GO:0006355
Mupr8871g00001 276 MobiDBLite consensus disorder prediction 251 270 - -
Mupr8871g00001 276 MobiDBLite consensus disorder prediction 219 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8871g00001 Mupr-Chr8871 6274 14125 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8871g00001 73 276 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.767 6.42e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mupr8871g00001 CBFB_NFYA 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8871g00001 K08064 - gmx:100499754 353.214