Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8827g00001 ATGGCCGTTGTCATTTGGTTAGGACATAAAACCCCTTTTTGGATCGGTGGAGCAAAGCCTTGCCGGCAAGATTCCCGAGGTTGTTCAATCGGCAATCAAGCACCGGCAAAAGAGACGAAGATGAAGGTTTTTGTGAAGACTCTCAAGGGAACACACTTTGAAATTGAAGTGAACCCCTCAAACACGCTTTCTGAAGTGAAGAAAAATATAGAAACTATTCAAGGTGCAAATGTCTATCCTGCTACACAACAAATGCTTATTCATGAAGGAAAAGTTCTAAAAGATGGTACTACTTTGGAGGAAAATAAAGTAGCTGAAAATAGTTCTATTGTAATTATGCTATCAAAAACTAAGAGCTCATCTGGTGAAGGATCTACTGCTTCAAGTGCACCTTCAGCTAAGCTGCATGCACAGACAAATGCAGCTCTTACTTCAACCTCTGTGTCTGCTGCACCGCAAGCTCCTGCTTCAACTGAAGCAACGCCAACACCTGTTACTTCCCCAGCCGCTGCACCAGCTCTTGCTCCTGTATCTTCAGGCTCTGCTGTGCCAGGGTCTGATATATATGGGCAAGCAGCATCGAATGTTGTTGCTGGAAGCAACTTGGAAGAAACAATTCAGCAAATCTTTGAGATGGGTGGAGGAAGCTGGGATAGGGACACTGTTGTCCGTGCTCTTCGTGCTGCTTATAACAACCCCGAAAGAGCTGTTGAATATTTGTATTCCGGCATACCAGAGCAAGCGGAAGCTCCACCCGTTACCCGAGTGCCTGCCAGTGCTCAACTTGCAAATTCTCCACAGGCAGCACAACCAGCATCTGTTCCTTCTAGTGGACCTAATGCTAGTCCTTTAGACCTCTTTCCCCAGGCTCTTCGTAATGTTGGTTCTGGTGCTGCTGCTGCTGGTTCTTTAGACTTTCTGCGCAACAATCAACAGCTGGATTCTTCAATGTTGTGCTGTGTTCAGTTCCAAGCCTTTCGTACTATGGTGCAGGCCAATCCGCACATATTGCAGCCTATGATACAAGAGCTTGGCAAACAAAATCCCAATCTTACGAGAATGATTCAAGAGCATCAAGTTGACTTCATTCGCCTAATTAATGAACCTCTTGAAGGGGGCGAGGGAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGAAGAGACTCTCACCCCTGAGGAGCGCCAAGCAATTCAACGTCTCGAAGCAATGGGTTTTGATCGTGCAACTGTGTTGGAGGTGTACTTTACTTGTAACAAAAATGAGGAACTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGATGAATAG 1320 0.4591 MAVVIWLGHKTPFWIGGAKPCRQDSRGCSIGNQAPAKETKMKVFVKTLKGTHFEIEVNPSNTLSEVKKNIETIQGANVYPATQQMLIHEGKVLKDGTTLEENKVAENSSIVIMLSKTKSSSGEGSTASSAPSAKLHAQTNAALTSTSVSAAPQAPASTEATPTPVTSPAAAPALAPVSSGSAVPGSDIYGQAASNVVAGSNLEETIQQIFEMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTRVPASAQLANSPQAAQPASVPSSGPNASPLDLFPQALRNVGSGAAAAGSLDFLRNNQQLDSSMLCCVQFQAFRTMVQANPHILQPMIQELGKQNPNLTRMIQEHQVDFIRLINEPLEGGEGNILGQLAGAMPQEETLTPEERQAIQRLEAMGFDRATVLEVYFTCNKNEELAANYLLDHMHEFDE 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8827g00001 439 MobiDBLite consensus disorder prediction 259 283 - -
Mupr8827g00001 439 MobiDBLite consensus disorder prediction 117 182 - -
Mupr8827g00001 439 SUPERFAMILY XPC-binding domain 318 376 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mupr8827g00001 439 Gene3D - 34 117 - -
Mupr8827g00001 439 NCBIfam UV excision repair protein Rad23 41 438 IPR004806 GO:0006289
Mupr8827g00001 439 Gene3D - 196 245 - -
Mupr8827g00001 439 FunFam UV excision repair protein RAD23 41 120 - -
Mupr8827g00001 439 Pfam XPC-binding domain 322 369 IPR015360 GO:0003684|GO:0006289|GO:0043161
Mupr8827g00001 439 ProSiteProfiles Ubiquitin domain profile. 41 119 IPR000626 GO:0005515
Mupr8827g00001 439 SUPERFAMILY UBA-like 376 438 IPR009060 GO:0005515
Mupr8827g00001 439 CDD Ubl_Rad23 41 114 - -
Mupr8827g00001 439 PRINTS DNA repair protein Rad23 signature 340 362 IPR004806 GO:0006289
Mupr8827g00001 439 PRINTS DNA repair protein Rad23 signature 421 436 IPR004806 GO:0006289
Mupr8827g00001 439 PRINTS DNA repair protein Rad23 signature 406 420 IPR004806 GO:0006289
Mupr8827g00001 439 PRINTS DNA repair protein Rad23 signature 389 405 IPR004806 GO:0006289
Mupr8827g00001 439 Pfam UBA/TS-N domain 395 430 IPR015940 -
Mupr8827g00001 439 Pfam UBA/TS-N domain 202 240 IPR015940 -
Mupr8827g00001 439 CDD UBA1_Rad23_plant 196 245 - -
Mupr8827g00001 439 PANTHER UV EXCISION REPAIR PROTEIN RAD23 41 428 - -
Mupr8827g00001 439 FunFam UV excision repair protein RAD23 homolog 195 245 - -
Mupr8827g00001 439 SMART uba_6 395 432 IPR015940 -
Mupr8827g00001 439 SMART uba_6 202 242 IPR015940 -
Mupr8827g00001 439 SUPERFAMILY Ubiquitin-like 41 119 IPR029071 -
Mupr8827g00001 439 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 200 243 IPR015940 -
Mupr8827g00001 439 MobiDBLite consensus disorder prediction 117 165 - -
Mupr8827g00001 439 FunFam UV excision repair protein RAD23 homolog 387 434 - -
Mupr8827g00001 439 SUPERFAMILY UBA-like 199 254 IPR009060 GO:0005515
Mupr8827g00001 439 SMART ubq_7 41 115 IPR000626 GO:0005515
Mupr8827g00001 439 MobiDBLite consensus disorder prediction 259 285 - -
Mupr8827g00001 439 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 392 433 IPR015940 -
Mupr8827g00001 439 Pfam Ubiquitin family 43 116 IPR000626 GO:0005515
Mupr8827g00001 439 Gene3D - 294 369 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mupr8827g00001 439 Gene3D - 392 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8827g00001 Mupr-Chr8827 4394 15634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8827g00001 41 114 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 2.13e-09 53.9