Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8816g00003 ATGGCTGTGTCACTGTGGAGAAGTCGCACTGTTTCATCAGCACTTAACTTGTTCGCCAATACTCTTCGGTGTTTCTCTTCTGAGGTGACAAACACCATTCCTCATAGTACACGAGAGAGTGTGATGACTCAAATGATGTATTCTGACATAAATGCACGAATTGGGAGTTGCATGCCACTGTCTGCAATGCGCATTGGAACAATCATTCACAACATTGAGTTGAACCCAGGGCAAGGTGGCAAGCTCGTGAGAGCTGCTGGAACTAGTGCAAAGATCTTGAAAGAGCCCACATCAGCATACTGTTTAATCCAACTGCCCTCGGGTGTTAAAAAGTTGATCGATTCTCGATGTAGGGCCACTGTTGGTGTTGTGTCTAATCCAAGCCATGGGGATCGCAAGCTTAGGAAGGCCGGACATAGGCGCTGGCTTGGTCGAAGGCCAGTTGTCCGAGGAGTGGCAATGAATCCCGTAGATCATCCTCATGGTGGAGGAGAGGGTAAGAGCAAGAGTAGTGGACGATGGGGGAAAGGATCTCGCACTCCTTGGGGCAAGCCAACAAAGAGTGGCTACAAGACTGGACCCTTGAAGCGCAGAAGTTTATTCAACAGAGTTAATACATAA 621 0.4831 MAVSLWRSRTVSSALNLFANTLRCFSSEVTNTIPHSTRESVMTQMMYSDINARIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPTSAYCLIQLPSGVKKLIDSRCRATVGVVSNPSHGDRKLRKAGHRRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGRWGKGSRTPWGKPTKSGYKTGPLKRRSLFNRVNT 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8816g00003 206 SUPERFAMILY Translation proteins SH3-like domain 54 192 IPR008991 -
Mupr8816g00003 206 ProSitePatterns Ribosomal protein L2 signature. 147 158 IPR022671 GO:0003735|GO:0005840|GO:0006412
Mupr8816g00003 206 NCBIfam 50S ribosomal protein L2 48 199 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Mupr8816g00003 206 Pfam Ribosomal Proteins L2, C-terminal domain 54 183 IPR022669 GO:0003735|GO:0005840|GO:0006412
Mupr8816g00003 206 PANTHER RIBOSOMAL PROTEIN L2 39 198 IPR002171 GO:0003735|GO:0005840|GO:0006412
Mupr8816g00003 206 FunFam 60S ribosomal protein L2, mitochondrial 48 124 - -
Mupr8816g00003 206 Gene3D Ribosomal protein L2, domain 3 125 204 IPR014726 -
Mupr8816g00003 206 FunFam 50S ribosomal protein L2 125 204 - -
Mupr8816g00003 206 Gene3D - 48 124 IPR014722 -
Mupr8816g00003 206 SMART Ribosomal_L2_C_2 52 185 IPR022669 GO:0003735|GO:0005840|GO:0006412
Mupr8816g00003 206 MobiDBLite consensus disorder prediction 153 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8816g00003 Mupr-Chr8816 16914 20105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8816g00003 44 164 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 41.860 1.77e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8816g00003 - - gmx:100527286 350.903