LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr8813g00002	ATGAATATGTGCTGCAAGACACCTACTCCTGAAAAGGTCAAAACCAGAAAGAAATGTGTCACTACCTGCCCACTGAATGAGATCCCTGCAGTCAATGTCATCAATGGGACAACCCAGAAGTGCAAAGCATGTGAGAAGACAGTGTATTTGGTGGATCAGCTCACTGCTGACAACAAGATCTATCACAAATCCTGCTTCAGATGCTACCACTGCAAGGGTACCCTTAAGTTGAGTAACTATTGTTCCTTTGAGGGTGTTTTATACTGTAAGCCTCATTTTGATCAACTCTTTAAGAAGACTGGCAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAACTGTTAGACTTGAAAGATCCACCGATCAGGTCCAAACCAATAGCAAGGTTTCAAATTTGTTTGCTGGAACTCAGGAAAAATGTGTTGCTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTAGCTGTTGATGGAACATCTTACCATAAAGCTTGTTTCAGGTGCACTCATGGAGGATGTGTCATTAGCCCATCAAATTATGTGGCCCATGAACATCGCCTTTATTGTAGGCACCATCATACTCAGTTGTTCAAGCAGAAAGGTAACTTCAGCCAACTTGACAAGCAAGAAAATAACGAAGGGGTGACTGAGAACACAACAACTGAGTAA	666	0.4174	MNMCCKTPTPEKVKTRKKCVTTCPLNEIPAVNVINGTTQKCKACEKTVYLVDQLTADNKIYHKSCFRCYHCKGTLKLSNYCSFEGVLYCKPHFDQLFKKTGSLDKSFEGIPRTVRLERSTDQVQTNSKVSNLFAGTQEKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKQENNEGVTENTTTE	221

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr8813g00002	221	CDD	LIM2_SF3	140	200	-	-
	Mupr8813g00002	221	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	35	66	-	-
	Mupr8813g00002	221	ProSiteProfiles	LIM domain profile.	138	198	IPR001781	-
	Mupr8813g00002	221	FunFam	LIM domain and actin-binding 1	35	105	-	-
	Mupr8813g00002	221	Pfam	LIM domain	140	195	IPR001781	-
	Mupr8813g00002	221	Pfam	LIM domain	41	95	IPR001781	-
	Mupr8813g00002	221	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	166	204	-	-
	Mupr8813g00002	221	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	67	107	-	-
	Mupr8813g00002	221	CDD	LIM1_SF3	37	99	-	-
	Mupr8813g00002	221	ProSiteProfiles	LIM domain profile.	39	99	IPR001781	-
	Mupr8813g00002	221	SMART	lim_4	40	92	IPR001781	-
	Mupr8813g00002	221	SMART	lim_4	139	191	IPR001781	-
	Mupr8813g00002	221	PANTHER	OS06G0237300 PROTEIN	36	124	-	-
	Mupr8813g00002	221	ProSitePatterns	LIM zinc-binding domain signature.	41	75	IPR001781	-
	Mupr8813g00002	221	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	132	165	-	-
	Mupr8813g00002	221	Gene3D	Cysteine Rich Protein	134	204	-	-
	Mupr8813g00002	221	Gene3D	Cysteine Rich Protein	36	105	-	-
	Mupr8813g00002	221	FunFam	LIM domain and actin-binding 1	134	204	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr8813g00002	Mupr-Chr8813	16698	20423	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Mupr8813g00002		LIM	3.2e-10	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr8813g00002	K09377		-	gmx:100500501	372.089