Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8733g00006 ATGACGAACTGTGAACTGCGATTAAGTATGCGGTGGGATCAGTTATCATTTGCATACAAAAATAGCTCTGGATCCGGTTCATGCCGCACCATTCCGGTCCCGGAGTTACTTTTTCACGGTGCTGCCCGTGGCGGAGACTCGCCGCTCCAATACTTCTCTCTCCCTAACCTTCTTCACTTCACCGTTCAAAACCACTTGATCTCGTCACTCTCTTTTCCTTTCTCCGATTCGCTTCTTCCCTTCGTTTATGGATCCGGCTTCTACTACTTCCCTTTCTCATTGCTTCTCCTCTCTCGCGCCCAACCTCTAACCTTCTTAGCTGATTCGCTGCGATTCATCGCTGAGGACACGGTTTTTGTGGTGGAAGGAAGACTGATATGCTGTGGGAAAATGTCGTTGAAAAGCTTAGTAAGAGAGCTAAAGGAGATGAGGGATGGGATTGGTAGCATGTCACGGCGAGGTGCAGGGAGCAGGCGATGGAACGGTCGGACAAAGTCACATGTTGCTCCAGATGTCACTCTAACTTCGCTTGAACCTATTCAGCAGGGTCAGTGGGCGAATTTGCCGGCTGAATTGCTTCTGGACATAATAAGGAGGGTGGAAGAGAGTGAGACTGCCTGGCCTGCACGTGCTGTTGTTGTTTATTGCGGTTCGGTTTGTAGATCATGGAGAGCCGTTACAAAAGAGATTGTTAAGACTCCTGAACAATGTGGAAGGCTCACATTTCCTATTTCGTTGAAGCAGCCTGGTCCCCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATATCTATTGTACATTGTGGAGAACGAGAGTGATAAGTTGTTATTAGCTGCCAAAAAGATAAGAAGGGCAACAGGCACAGACTTCATCACATCTTTGGTTGCAGATGATTTTTCACGGTCCAGCAGCACATATGTTGGAAAACTCAGGCAAGTATCTCCAAGAGTTCCAGCATGTAACTATGTTGTTAGCACCATTGCCTATGAGTTGAATGTTCTTCGTGCAAGAGGGCCAAGGAGAATGCACTGCACCATGAACTCCATACCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTCCCTCAAATCATTGACGAGCCCTTTTCTTCCTCTCCATCACTGAAAGGAAAAAGTCCAATTAGAGATTTAAACAATGAAAGTCTCCCAGAACTACCAGTTGGCTCAGCTGAGCCTCTGGTACTTAAAAACAAGGCTCCTAGATGGCATGAGCAACTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTTACGGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCGGAGCAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACCATGGATTACCGTTATCCGCTCTCTGCATTCCAAGCCTTTGCCATATGTTTGAGCAGCTTTGATACCAAACCAGCCTGTGAATGA 1512 0.463 MTNCELRLSMRWDQLSFAYKNSSGSGSCRTIPVPELLFHGAARGGDSPLQYFSLPNLLHFTVQNHLISSLSFPFSDSLLPFVYGSGFYYFPFSLLLLSRAQPLTFLADSLRFIAEDTVFVVEGRLICCGKMSLKSLVRELKEMRDGIGSMSRRGAGSRRWNGRTKSHVAPDVTLTSLEPIQQGQWANLPAELLLDIIRRVEESETAWPARAVVVYCGSVCRSWRAVTKEIVKTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTYLLYIVENESDKLLLAAKKIRRATGTDFITSLVADDFSRSSSTYVGKLRQVSPRVPACNYVVSTIAYELNVLRARGPRRMHCTMNSIPVSAVQEGGNAPTPTSFPQIIDEPFSSSPSLKGKSPIRDLNNESLPELPVGSAEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8733g00006 503 Pfam Tub family 318 498 IPR000007 -
Mupr8733g00006 503 CDD F-box_AtTLP-like 185 229 - -
Mupr8733g00006 503 ProSitePatterns Tub family signature 2. 488 503 IPR018066 -
Mupr8733g00006 503 Pfam F-box domain 185 232 IPR001810 GO:0005515
Mupr8733g00006 503 Gene3D - 178 233 - -
Mupr8733g00006 503 PANTHER TUBBY-RELATED 177 501 - -
Mupr8733g00006 503 SUPERFAMILY F-box domain 179 228 IPR036047 GO:0005515
Mupr8733g00006 503 PRINTS Tubby superfamily signature 296 312 IPR000007 -
Mupr8733g00006 503 PRINTS Tubby superfamily signature 413 430 IPR000007 -
Mupr8733g00006 503 PRINTS Tubby superfamily signature 431 447 IPR000007 -
Mupr8733g00006 503 PRINTS Tubby superfamily signature 460 479 IPR000007 -
Mupr8733g00006 503 PRINTS Tubby superfamily signature 481 503 IPR000007 -
Mupr8733g00006 503 Gene3D Tubby Protein; Chain A 243 503 IPR025659 -
Mupr8733g00006 503 ProSitePatterns Tub family signature 1. 431 444 IPR018066 -
Mupr8733g00006 503 SUPERFAMILY Tubby C-terminal domain-like 234 503 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8733g00006 Mupr-Chr8733 51395 54390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8733g00006 131 503 TUB Transcription Factor Family AT2G18280 61.125 2.27e-165 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mupr8733g00006 Tub 4e-65 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8733g00006 K19600 - gmx:100798958 669.463