Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8733g00003 ATGGGTGGTGTTGTTTTGCAAAATTTTGCAAAGATGAATGATTTGATGACAAAATCGTTCCTAAGTTATGTGGAACTAAAGAAACAGGCTCAGAAGGACCTTGAAAACGATCTTGACATTGAAGCAGGGAAAGTCAACCCCATGGAAGACCGCAACCTCTCTCGCTTCTTCCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATTACCAATCTCTTATTTGATCTTCAGCAACTGAATGAGGAGACAAAGTGCACCCACAGTGCTAAAGTTCTTCGTGGCCTAAGGGACCGCATGGAGTCTGACATGGTTTCCGTGCTTCGCAAGGCAAGGATTATCAAGACAATGCTTGAGGTTCTTGACAAATCCAACATAGCCAATCGCAGTTTATCAGAATCCTACAAAGAGGGTAGCCCCATTGACAGGACCAGAATGTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGACTTTCAGTCCTTGAGAGACAAGATTCTATCAGATCACAAGGAGGATTTGAAGAGAAGGTACTACACGGCGACAGGCGAGGTTCCCAGTGAGGAGGACATGGAGAAGATGGTTTCTGGGAGTCTCAAAGTGGAGTTTTTGGCTGGGAAAACGGATGCTGATTTGGGCACTCAGGTTAGGCATGAGGCAGTGATGGATATACAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGATATGGCTATTCTGGTTGAGACACAGGGAGAAAACGTGGATAACATTGAGGATAATGTGGCCAGTGCGGGTAACTTCATCCATGGTGGGACTAATAGTCTTTACTATGCCAACCAGATGAAGAAGAACAACAGAAAATGGTGTAAACAAATTATAGCCACTAATTTTGAGCAACGTCCTCTACTCTTTTCTCCAAATTATTTCAACTTCTCTTTGGACGATAGTTCGATTTCTTTGCACTTGAACAGTGGCTATGCTGCTCCTTCCACCAAACGCGGAGCAGACCCTGGCCTTACTGGAGAGATGTTCAAATATAAAAGAAGTGATGCAGATTCATGGCCAATTGTTGAAAAAAGGCACCATCAGGCACCAGTTAACAGTAAGCAGGCTCTTGGCTTCATACGCAAGAATAGAGTTGGAATAAACTCACCTGATACTGTCATGTGGAACACCATGATCAGAGCATACTCAAAAAGCAATGACTTAGAAGCAGCGCTGCTTTTGTACCATCAAATGCTTCACCATTCAGTACCTCACAACTCTTATACTTTCCCTTTCCTTCTCAAAGCATGCTCTGCTCTCTCAGCCTTCAAAGAAATACAGCAACTCCACGCTCAAATTATCAAAAGGGGTTTCGGTTCGGAGGTTTATGCCACAAACTCTCTCCTTCGTGTTTATGCAATATCAGGCAACATCCAATCTGCACACGTCCTCTTCAATCAGCTTCCCTCGCGAGATATTGTTTCTTGGAACACAATTGTTGATGGGTACATAAAATTTGGAAACATAGACATGGCCTACAAGATTTTTCAAGCAATGCCAGTGAAGAATGTCATCTCTTGGACAACCATGATTGTTGGGTTTGTTAGGGCAGGCATGTACAAAGAAGCTCTGTCTCTTTTACAGCAAATGCTGGTTGCAGGCATCAAACCTGATAGTACAACCCTGAGTTGCTCTCTTTCAGCATGTGCAGGTCTCGGTGCATTGGAGCAAGGCGAGTGGATTCACACCTATATTGAAAAAAATGAAATAAAAATAGATCCAGTTTTGGGTTGTGTTCTTATAGACATGTATGTTAAATGTGGTGAAATGGAAAAGGCCCTACTAGTGTTTAGTAAGTTGGAGAAGAAATGTGTCTGTTCTTGGACGGCAATAATCGGTGGCTTTGCAATCCATGGAAAGGGTAGAGAAGCTCTAGATTGGTTTATCCAAATGCAAAAGGCAGGAACTACGCCAAATTCAATCACTTTTACAGCAATTCTGACTGCATGTAGTCATGCAGGACTAACTGAAGAAGGAAAGTCCCTGTTTGAGAGTATGAGTGATGTTTACAATATTAAACCTTCTATGGAGCATTATGGATGCATGGTGGACCTTATGGGTCGCGCAGGATTGTTGACAGAAGCAAGGGAGTTCATAGATTCCATGCCCGTAAAGCCAAATGCTGCAATATGGGGAGCACTGCTTAATGCTTGCCAACTGCACAAACATTATGAGCTTGGTAAAGAGATTGGCAAAATTCTGATTGAATTGGACCCTGATCATAGTGGCCGGTATATTCATTTGGCAAGCATTTATGCTGCTGCTGGAGAATGGAACCAAGCGGTCAGAGTGAGAAGCCAGATCAAACATAGGGGACTGCTAAATCTTCCAGGATGCAGTAGCATCACCCTGAATGGGGTTGTCCATGAGTTCTTTGCCGGGGCCAGATCCCACCCACTTATCCAAGAGATATATGACATGCCTGATCTCCTTGCAAATAGATGA 2487 0.4326 MGGVVLQNFAKMNDLMTKSFLSYVELKKQAQKDLENDLDIEAGKVNPMEDRNLSRFFQEVEAIKVEMEEITNLLFDLQQLNEETKCTHSAKVLRGLRDRMESDMVSVLRKARIIKTMLEVLDKSNIANRSLSESYKEGSPIDRTRMSVTNGLRVKLRDMMNDFQSLRDKILSDHKEDLKRRYYTATGEVPSEEDMEKMVSGSLKVEFLAGKTDADLGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGENVDNIEDNVASAGNFIHGGTNSLYYANQMKKNNRKWCKQIIATNFEQRPLLFSPNYFNFSLDDSSISLHLNSGYAAPSTKRGADPGLTGEMFKYKRSDADSWPIVEKRHHQAPVNSKQALGFIRKNRVGINSPDTVMWNTMIRAYSKSNDLEAALLLYHQMLHHSVPHNSYTFPFLLKACSALSAFKEIQQLHAQIIKRGFGSEVYATNSLLRVYAISGNIQSAHVLFNQLPSRDIVSWNTIVDGYIKFGNIDMAYKIFQAMPVKNVISWTTMIVGFVRAGMYKEALSLLQQMLVAGIKPDSTTLSCSLSACAGLGALEQGEWIHTYIEKNEIKIDPVLGCVLIDMYVKCGEMEKALLVFSKLEKKCVCSWTAIIGGFAIHGKGREALDWFIQMQKAGTTPNSITFTAILTACSHAGLTEEGKSLFESMSDVYNIKPSMEHYGCMVDLMGRAGLLTEAREFIDSMPVKPNAAIWGALLNACQLHKHYELGKEIGKILIELDPDHSGRYIHLASIYAAAGEWNQAVRVRSQIKHRGLLNLPGCSSITLNGVVHEFFAGARSHPLIQEIYDMPDLLANR 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8733g00003 828 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 215 277 IPR000727 -
Mupr8733g00003 828 Gene3D - 217 288 - -
Mupr8733g00003 828 Gene3D - 48 179 - -
Mupr8733g00003 828 SMART tSNARE_6 210 277 IPR000727 -
Mupr8733g00003 828 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 591 820 - -
Mupr8733g00003 828 Pfam PPR repeat 460 486 IPR002885 -
Mupr8733g00003 828 Pfam PPR repeat 692 717 IPR002885 -
Mupr8733g00003 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 516 IPR002885 -
Mupr8733g00003 828 CDD SynN 53 203 IPR006011 GO:0016020
Mupr8733g00003 828 CDD SNARE_syntaxin1-like 219 274 - -
Mupr8733g00003 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Mupr8733g00003 828 Pfam Syntaxin 55 250 IPR006011 GO:0016020
Mupr8733g00003 828 Pfam E+ motif 802 820 IPR046849 -
Mupr8733g00003 828 Coils Coil 63 83 - -
Mupr8733g00003 828 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 381 826 IPR046960 GO:0003723|GO:0009451
Mupr8733g00003 828 NCBIfam pentatricopeptide repeat 488 515 IPR002885 -
Mupr8733g00003 828 NCBIfam pentatricopeptide repeat 655 689 IPR002885 -
Mupr8733g00003 828 NCBIfam pentatricopeptide repeat 621 653 IPR002885 -
Mupr8733g00003 828 NCBIfam pentatricopeptide repeat 519 553 IPR002885 -
Mupr8733g00003 828 NCBIfam pentatricopeptide repeat 387 417 IPR002885 -
Mupr8733g00003 828 Gene3D Tetratricopeptide repeat domain 483 588 IPR011990 GO:0005515
Mupr8733g00003 828 Gene3D Tetratricopeptide repeat domain 368 482 IPR011990 GO:0005515
Mupr8733g00003 828 SMART SynN_4 48 175 IPR006011 GO:0016020
Mupr8733g00003 828 FunFam Syntaxin 132 210 296 - -
Mupr8733g00003 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Mupr8733g00003 828 Gene3D Tetratricopeptide repeat domain 592 756 IPR011990 GO:0005515
Mupr8733g00003 828 FunFam Pentatricopeptide repeat-containing protein 459 572 - -
Mupr8733g00003 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Mupr8733g00003 828 Pfam PPR repeat family 617 665 IPR002885 -
Mupr8733g00003 828 Pfam PPR repeat family 516 564 IPR002885 -
Mupr8733g00003 828 Pfam PPR repeat family 384 431 IPR002885 -
Mupr8733g00003 828 SUPERFAMILY TPR-like 382 777 IPR011990 GO:0005515
Mupr8733g00003 828 Pfam E motif 735 796 IPR046848 -
Mupr8733g00003 828 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 50 181 - -
Mupr8733g00003 828 SUPERFAMILY t-snare proteins 51 270 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8733g00003 Mupr-Chr8733 24948 28349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8733g00003 12 288 SNARE and Associated Proteins AT2G18260 62.238 2.26e-119 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8733g00003 - - gmx:100818848 832.402