Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8693g00004 ATGTCGCGCGTGTATGTTGGCAACTTGGATTCACGAGTCACCGAGAGAGATCTTGAAGACGAATTTCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCCCGAAGACCACCTGGTTATGCTTTTATTGACTTCGATGACCGGAGAGATGCGCAAGATGCTATTCGCGAATTGGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGTGGTCGTGGTGGTCGCTCTGGTGGTTCTGATTTGAAATGTTATGAGTGCGGTGAACCTGGTCATTTTGCACGTGAATGTCGCTTGCGCGGTGGTTCAGGCAGACGCCGTAGCCGTAGTCCACCTCGATTTCGTAGGAGCCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCGCCGCAGCTTGTCACCTCGTGGACGTAGTTACAGCAGGTCACCTCCTTATCGCGGGCGTGATGAGGTTCCGTATGCTAATGGAAATGGCCTTAGGGAACGACGCAGAAGCAGAAGTAATGATCTTGTTAAGTATATGCTTTTCTTCTCTGTTGAGATATCTTCTGGTACTGCTTCATTGGTTTTGCGCATCTTCATTCACTGGGATGGGTTGACGACCTGCATCAAATACTTCTGGCAGATTGTATAG 666 0.5015 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGRDEVPYANGNGLRERRRSRSNDLVKYMLFFSVEISSGTASLVLRIFIHWDGLTTCIKYFWQIV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8693g00004 221 SMART rrm1_1 3 69 IPR000504 GO:0003723
Mupr8693g00004 221 CDD RRM_SRSF3_like 3 71 - -
Mupr8693g00004 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Mupr8693g00004 221 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Mupr8693g00004 221 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Mupr8693g00004 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Mupr8693g00004 221 SMART c2hcfinal6 89 105 IPR001878 GO:0003676|GO:0008270
Mupr8693g00004 221 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
Mupr8693g00004 221 Gene3D - 84 142 - -
Mupr8693g00004 221 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 158 - -
Mupr8693g00004 221 FunFam Serine/arginine-rich splicing factor RSZ22A 86 146 - -
Mupr8693g00004 221 SUPERFAMILY Retrovirus zinc finger-like domains 82 105 IPR036875 GO:0003676|GO:0008270
Mupr8693g00004 221 MobiDBLite consensus disorder prediction 103 171 - -
Mupr8693g00004 221 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
Mupr8693g00004 221 MobiDBLite consensus disorder prediction 66 86 - -
Mupr8693g00004 221 Gene3D - 2 69 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8693g00004 Mupr-Chr8693 17915 22342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8693g00004 2 59 Eukaryotic Initiation Factors Gene Family AT4G34110 38.095 1.38e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8693g00004 K12896 - gmx:100790689 250.751