LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr8687g00003	ATGGCTCTTCTTCTAGACAACTGCGAAGGCATTTTACTCTCTTTGGACTCACACAAATCGGTGCCAGCTCCTTTTCTCACAAAAACATACCAACTCGTCGACGATCCCGCCACAGACCACATAGTTTCTTGGGGCGAAGACGACACCACCTTTGTCGTTTGGCGTCCCCCAGAGTTCGCCAGAGACCTTCTTCCTAACTACTTCAAACACAACAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGTTTTAGGAAGATTGTGCCAGACCGATGGGAGTTCGCGAACGAATTCTTCAAGAAGGGAGAGAAACACTTGCTGTGCGAGATCCATAGAAGAAAAACGGCACAGCCTCAACAAGGAAGCATGAATCCCCAGCACCATCACCATTCTCTTTCTTCTCCTCTTGGAGTCAACGTCAACGTTCCCTCTTTCTTTCCCTTCTCCGGCAGAGTCAGCATCTCCCCGTCCAACGACTCCGACGAGCAAGCCAATTGGTGCGACTCGCCGCCACGTGGAGCGGCGTCATTGGTGAATGGTGCAGCCAACTACAGCACTTCCGTCACCGCGCTTTCCGAGGACAACGAGAGACTGAGGCGAAGCAACAACATGCTGATGTCGGAGCTGGCTCACATGAAGAAGCTCTATAACGACATTATCTACTTCGTTCAGAACCATGTCAAGCCAGTGGCTCCAAGCAACTCTTACTCTTCTTCTTTGCTACTATGCAATGCACCTTCTGCCACTCCAATAAGTGCTGCCAATAATGTTTCAATGATGCAAAGGCCAATGAACCAGCTTCTGGGGTATTATTCTAGTAACCCTAAGCATGGAACTACTCAACATCAACCTCAGAACTATGTTGTGAACTCTCCCACCAACACATCTAGAAGTTCTATAACGATGGTTGAAGGGCCTAACAGTAACAACTGCAAAACCAAGCTTTTTGGGGTGTCGCTGCAGTCAAAGAAAAGGGTGCACCCGGATTATGGATCTAATTCGGAGACAAACAAGGCTCGTTTGGTTTTGGAAAAAGATGACTTGGGCTTGAATCTTATGCCACCATCCACTTGTTAG	1080	0.4833	MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQGSMNPQHHHHSLSSPLGVNVNVPSFFPFSGRVSISPSNDSDEQANWCDSPPRGAASLVNGAANYSTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSLLLCNAPSATPISAANNVSMMQRPMNQLLGYYSSNPKHGTTQHQPQNYVVNSPTNTSRSSITMVEGPNSNNCKTKLFGVSLQSKKRVHPDYGSNSETNKARLVLEKDDLGLNLMPPSTC	359

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr8687g00003	359	Gene3D	-	17	116	IPR036388	-
	Mupr8687g00003	359	FunFam	Heat stress transcription factor B-4	17	115	-	-
	Mupr8687g00003	359	SMART	hsfneu3	21	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8687g00003	359	SUPERFAMILY	"Winged helix" DNA-binding domain	22	114	IPR036390	-
	Mupr8687g00003	359	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	18	281	IPR027725	-
	Mupr8687g00003	359	MobiDBLite	consensus disorder prediction	115	134	-	-
	Mupr8687g00003	359	Pfam	HSF-type DNA-binding	25	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8687g00003	359	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8687g00003	359	PRINTS	Heat shock factor (HSF) domain signature	76	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8687g00003	359	PRINTS	Heat shock factor (HSF) domain signature	25	48	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8687g00003	359	ProSitePatterns	HSF-type DNA-binding domain signature.	64	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8687g00003	359	Coils	Coil	189	209	-	-
	Mupr8687g00003	359	MobiDBLite	consensus disorder prediction	116	134	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr8687g00003	Mupr-Chr8687	27514	28698	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr8687g00003	1	358	HSF	AT1G46264	55.937	8.24e-126	363

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Mupr8687g00003		HSF_DNA-bind	2.8e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr8687g00003	K09419		-	gmx:100781389	649.818