Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8665g00006 ATGGCGTCACGTGAATTGTTGTGCGGTGCGGTGAAACTGTCCTTCATAAACGGAGCGACACCCTCTTTTTGGAATGAAATCATGGGCCGTTTATACCGTTTTGAGATTGAATGGTATTTTGTTGGTTATGAGAAGATAGACAGCTCCATGTTCGAGAATTATATATGTTATGTGAATATTGCTAGACTCGAATTTGAAGGTTGTAAACAATTGATGGATGAGTATTCTGGTAAAAAAGCCGTGCATGGGGTGGTAGTTCCTAGAAAGGGGACGAGCCATGTATTTAGAGATACTGCTAATACTAGGGATCGAAATGGTCAAACTTGTAGCCGATTAGGTTGCAATAGTAGAGCCAATCTTCCCAAAGTTGCTCAAGTCAGATCTTCTGAAAAAGGTAAATCTTCGAGGCCTTCAAGTAGCAAGGAAGCAATTGGAAGTTCCTCTAGGACTACTACTAGTAACCCAGGAAAACGACGTATAGAACCTCGGAAAACATTATCCTCCCAGTTTGAGACAGATTCATCTGAAACTAGTAGTGTACAGGATGAACCAGAATTTTCAGAGCTCATCCCTCCACATAGAGGTCCTCAAGCAGAAGGGGAAAGTACAGAGTCTAGTAATGCGATACTGATGGAAGTAGGAAGCTCTAGTGCAATATCAAATACTAGATCTCAAAGGAATTTAAATCAAAGATCTGGATCACGTGGGCAAGAAATTAAAAGCACTGGTTCAATGAGACGTGTTGTTTCCAGCCGGTATGGGTTGAAGAACCTCAGATGCAATTCAATATCTGATGTCATCCCAGCTGGTTGTTCATCATCAGATTCAAACCTTACTAAAAGGAAGGACACAATAAAAAAGGGAAACTGTGAAGGGGGAAGAAGTTCTGCTGTTAGAGGGAAAAATATGACTGGGTCTTCTTCACTAGAAGGACGCAATTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGATCTAGAAATATTCCTTCTCCCCGGAACATCAACCCAGCATCAATTAGAAGTCAAAGATCAATCAGTGGTCATGCTAGGGGAAGGTTTTCTAGCGAAGGAAACGAAAACCCTGGGGCAACCAACGAGGCCCCTGTTGTGCTACCCCATTCACCTCATTCCTATGATCTTAATGCTTCTGTCGTTTCATATCATACTTCTATGGAGACTCCTTTAAGTCACTCAAGCTCTTACGGTAGATCGGGCAATAGCAGCGAGCAGTTATGTAGTGTCATGCCTGTGTCTCCTGCGGAAGATGACATCCCTCATTCTCTAATAAGTCAGGATAGCTTTCGACATCACAATATGGGTGGTATTGCAGAGGTATTATTGGCACTTGAGAGGATTGAACAAGATGCAGAGCTAACCAATGAGCAAATTCTTTTGTTGGAGACCAACTTGTTCCTTAATGGATTAAACTTTTATGATCACCACAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTTTTAGCTCTAGAAGAGAGGATGGGAACTGTGAGCACAGCTCTACCGGAAGAAGTGCTTTCAGAATGTCTTAAAAGAAGTATAGTTCAGTCTGCACCTTCAGATTATGCAGATGAGAGTTGTAATGAGGATATGGATGATACCAAATGCTGCATTTGCCAGGAAGAATATGTTGCTGGAGATGAAGTTGGGGTTCTGCAATGTGAGCATAGATTTCATGTGGTTTGCATACAGGAGTGGCTGCGGCTGAAGAACTGGTGCCCTATTTGTAAAGTATCAGCAGCACAGTCCAAGTCATCTTCACCTCATTGA 1806 0.4219 MASRELLCGAVKLSFINGATPSFWNEIMGRLYRFEIEWYFVGYEKIDSSMFENYICYVNIARLEFEGCKQLMDEYSGKKAVHGVVVPRKGTSHVFRDTANTRDRNGQTCSRLGCNSRANLPKVAQVRSSEKGKSSRPSSSKEAIGSSSRTTTSNPGKRRIEPRKTLSSQFETDSSETSSVQDEPEFSELIPPHRGPQAEGESTESSNAILMEVGSSSAISNTRSQRNLNQRSGSRGQEIKSTGSMRRVVSSRYGLKNLRCNSISDVIPAGCSSSDSNLTKRKDTIKKGNCEGGRSSAVRGKNMTGSSSLEGRNSGSRNGISISDSRRSRNIPSPRNINPASIRSQRSISGHARGRFSSEGNENPGATNEAPVVLPHSPHSYDLNASVVSYHTSMETPLSHSSSYGRSGNSSEQLCSVMPVSPAEDDIPHSLISQDSFRHHNMGGIAEVLLALERIEQDAELTNEQILLLETNLFLNGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALPEEVLSECLKRSIVQSAPSDYADESCNEDMDDTKCCICQEEYVAGDEVGVLQCEHRFHVVCIQEWLRLKNWCPICKVSAAQSKSSSPH 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8665g00006 601 MobiDBLite consensus disorder prediction 167 184 - -
Mupr8665g00006 601 MobiDBLite consensus disorder prediction 269 378 - -
Mupr8665g00006 601 ProSiteProfiles Zinc finger RING-type profile. 548 589 IPR001841 -
Mupr8665g00006 601 MobiDBLite consensus disorder prediction 120 204 - -
Mupr8665g00006 601 Pfam Ring finger domain 547 589 IPR001841 -
Mupr8665g00006 601 SUPERFAMILY RING/U-box 542 593 - -
Mupr8665g00006 601 Coils Coil 445 472 - -
Mupr8665g00006 601 MobiDBLite consensus disorder prediction 216 247 - -
Mupr8665g00006 601 FunFam E3 ubiquitin-protein ligase arkadia 510 594 - -
Mupr8665g00006 601 MobiDBLite consensus disorder prediction 95 114 - -
Mupr8665g00006 601 MobiDBLite consensus disorder prediction 128 155 - -
Mupr8665g00006 601 SMART ring_2 548 588 IPR001841 -
Mupr8665g00006 601 MobiDBLite consensus disorder prediction 299 365 - -
Mupr8665g00006 601 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 513 594 IPR013083 -
Mupr8665g00006 601 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 136 593 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8665g00006 Mupr-Chr8665 30881 35882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8665g00006 430 595 C3H Transcription Factor Family AT2G15530 43.114 1.94e-35 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8665g00006 - - gmx:100812055 795.423