LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr8660g00002	ATGGAGGGAGTTATAGTGAAAGAAGAAGAGACAATGGCTTACGCAGCTGGTGCTTCAGCTTCAACGTCCTCTTCATCTTCCAACCTCTCCCCGCAACCCATGGAAGGGTTGCACGATGTGGGTCCCCCTCCGTTTCTGACCAAAACCTTCGAAGTTGTGGAAGACCCCTCCACTGACGACGTCGTTTCGTGGAGTAGAGCTCGCAACAGTTTCATCGTTTGGGACTCTCACAAGTTCTCCACCACCATCCTGCCTCGTTACTTCAAGCACAACAACTTCTCAAGCTTCGTCCGACAACTCAATACCTATGGTTTTAGAAAAGTTGATCCTGACAAATGGGAATTTGCGAATAAGGGGTTTCTGGCGGGGCAGAGGCATTTGTTGAAGACGATCAGAAGAAGGAGGAACGTGACACAGACAACAACAACGCAGACACATGATGGAGGAGATGGGGCTTGTGTTGAATTAGGGGAGTTTGGGTTGGAAGGTGAGATGGAGAGGTTGAGGAGAGATAGAACAGTGTTGATGGCTGAAATTGTGAGGTTGAAGCAGCAACAGCACAATTCGAGGGATCAATTGTTGTCCATGGAGGCTAGATTGCAAGCCACTGAGAAGAAACATCAAAACATGGTGGCTTTTCTCACTAAAGCACTCAACAACCAGGCTTTTATTCAGCAGTTTCTCCTTCGCAGGAATGCTCAGAACAAGGAGTTGCAAGGTGTTAGAAGAAAGCGGAGACTAACTGCTACCCCCAGTGAGGAGAATTTGCAGCAAGATCCTTTGATTGAAATTTCGGTGCCAATTGAAGGAGAAGAATCAGAAACTATTGAGTCTCAGATGGCGTCTCTTTTTTCTGCTGCTTGTGATGATGAATCAAGCAGTGAAATCATGGTTCCAGCTGCAAGTGGGAGCAATTTGGGGGCGGTGAGTGATGCTATATGGGAGGACTTGCTTAGCCAAGATTTGGTTGCTGCTGGGGATCCTGAGGATGAGGTTGTGATTGATGATTTTTCACCAATTGATGTTCCTGTGGAGGATTTGGTTGCGGTGCCCGATCAGTGGAGTGAGGATTTGAAGAACCTTGTGGATCATATGGGTTATCTTGGCTCCAAACCTTAG	1119	0.4727	MEGVIVKEEETMAYAAGASASTSSSSSNLSPQPMEGLHDVGPPPFLTKTFEVVEDPSTDDVVSWSRARNSFIVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANKGFLAGQRHLLKTIRRRRNVTQTTTTQTHDGGDGACVELGEFGLEGEMERLRRDRTVLMAEIVRLKQQQHNSRDQLLSMEARLQATEKKHQNMVAFLTKALNNQAFIQQFLLRRNAQNKELQGVRRKRRLTATPSEENLQQDPLIEISVPIEGEESETIESQMASLFSAACDDESSSEIMVPAASGSNLGAVSDAIWEDLLSQDLVAAGDPEDEVVIDDFSPIDVPVEDLVAVPDQWSEDLKNLVDHMGYLGSKP	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr8660g00002	372	MobiDBLite	consensus disorder prediction	16	33	-	-
	Mupr8660g00002	372	SUPERFAMILY	"Winged helix" DNA-binding domain	41	134	IPR036390	-
	Mupr8660g00002	372	FunFam	Heat shock transcription factor 1	38	135	-	-
	Mupr8660g00002	372	PRINTS	Heat shock factor (HSF) domain signature	45	68	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8660g00002	372	PRINTS	Heat shock factor (HSF) domain signature	83	95	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8660g00002	372	PRINTS	Heat shock factor (HSF) domain signature	96	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8660g00002	372	ProSitePatterns	HSF-type DNA-binding domain signature.	84	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8660g00002	372	Pfam	HSF-type DNA-binding	45	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8660g00002	372	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	31	272	IPR027725	-
	Mupr8660g00002	372	Gene3D	-	38	135	IPR036388	-
	Mupr8660g00002	372	SMART	hsfneu3	41	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8660g00002	372	MobiDBLite	consensus disorder prediction	16	35	-	-
	Mupr8660g00002	372	Coils	Coil	165	185	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr8660g00002	Mupr-Chr8660	12034	13255	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr8660g00002	31	372	HSF	AT2G26150	53.295	5.75e-122	354

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Mupr8660g00002		HSF_DNA-bind	7.9e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr8660g00002	K09419		-	gmx:100794605	532.717