Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8615g00002 ATGGCCAAGAGCCTCTCCAACATGTCAAAAGCTTCCTTCTGTGAGCAGGTGGGAATTTCAGTGCAGAGCTCCTTTGAAGATGAAAAGAAAGTGCTCTGTAACCGGGAATCCATCTCTCACATGAAACCAGAGCAGACAGTAGAATGTGTTACTTACAAAGTTGGCACTTGCAGGCATTGTGGAGACAAAGAAGATGGGACAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTATCATCTGTCCTGCATTAAGCCTGCTGTGATAGAAATACCCCGCAAAAGCTGGTTCTGTGCCAGTTGTACTGCTAGTGGAATTGGATGTCTACACGAGAACTGTGTGGTGTGTGAGCGGTTGAATGTCCCGAAGACCCTGGACCACATTGTTGGCGAGGAAAGCATCCCTACAAATGAGGAAACACTGAATAAATTGGAAGAAAATTTGAATTGTACTTATGATGGGATTCAAGTTTCCACAGGTGGGAGAAACTCGTCTGACTGCAAAATTTGTAAAATGGTGGTGGATGGTGAAAAACTAAAAATCTGTGGTCACTCTTTTTGCCCCAGTAAGTACTACCATATAAGGTGTTTGTCAAGTAAGCAGATGAAGTCATATGGTCGCTGTTGGTATTGCCCTTCGTGTATATGCCAAGTTTGCCTCACTGACAAAGATGATGATAAGATTGTACTCTGTGATGGCTGCGATCATGCATACCATATCTACTGCATGAAACCTCCACGACATTCTATTCCAAGGGGGAAATGGTTCTGCATAAAATGCGATGCCGGGATCCAAGTAATACGGCAGGCAAGAAAGGTGTATGAGAGTAACAAAGGGGAAGTTGGTCAGAGTGATTCTAAGCCAAATGAAAATATTGATAAGAAATGGAACAAAAAGCGAGGATGCGAACTGGACAAAGTTGGAGGAATGGACATGCTTATAACTGCAGCAAATACTCTGAATTCTGAAGAGGACGTAAATGCAATCCAGATTGACTCAAAGAGTACATTAACATGA 1017 0.4287 MAKSLSNMSKASFCEQVGISVQSSFEDEKKVLCNRESISHMKPEQTVECVTYKVGTCRHCGDKEDGTDCLVCDSCEEMYHLSCIKPAVIEIPRKSWFCASCTASGIGCLHENCVVCERLNVPKTLDHIVGEESIPTNEETLNKLEENLNCTYDGIQVSTGGRNSSDCKICKMVVDGEKLKICGHSFCPSKYYHIRCLSSKQMKSYGRCWYCPSCICQVCLTDKDDDKIVLCDGCDHAYHIYCMKPPRHSIPRGKWFCIKCDAGIQVIRQARKVYESNKGEVGQSDSKPNENIDKKWNKKRGCELDKVGGMDMLITAANTLNSEEDVNAIQIDSKSTLT 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8615g00002 338 SUPERFAMILY FYVE/PHD zinc finger 40 102 IPR011011 -
Mupr8615g00002 338 SUPERFAMILY FYVE/PHD zinc finger 162 215 IPR011011 -
Mupr8615g00002 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 219 IPR013083 -
Mupr8615g00002 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 262 IPR013083 -
Mupr8615g00002 338 Pfam PHD-finger 215 261 IPR019787 -
Mupr8615g00002 338 Pfam PHD-finger 57 103 IPR019787 -
Mupr8615g00002 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 106 IPR013083 -
Mupr8615g00002 338 ProSiteProfiles Zinc finger PHD-type profile. 213 263 IPR019787 -
Mupr8615g00002 338 ProSiteProfiles Zinc finger PHD-type profile. 54 104 IPR019787 -
Mupr8615g00002 338 SUPERFAMILY FYVE/PHD zinc finger 215 267 IPR011011 -
Mupr8615g00002 338 PANTHER OS02G0192300 PROTEIN 2 152 - -
Mupr8615g00002 338 SMART PHD_3 218 261 IPR001965 -
Mupr8615g00002 338 SMART PHD_3 56 102 IPR001965 -
Mupr8615g00002 338 SMART PHD_3 166 215 IPR001965 -
Mupr8615g00002 338 ProSitePatterns Zinc finger PHD-type signature. 57 101 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8615g00002 Mupr-Chr8615 10603 13260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8615g00002 191 275 C2H2 Transcription Factor Family AT3G01460 36.170 2.21e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr8615g00002 PHD 5.7e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8615g00002 - - gmx:100786712 616.305