Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8605g00005 ATGAACCCGCTAACACTAGTGAAGCGCATTCAGAACATCAATTCGAAAGAAGCGGCACTCGGTATCGGCGAGCAAGCCTCATGGCACACCAAGTACAAAGACTCCGCTTACGTTTTCGTCGGCGGCATCCCCTTCGATCTCACCGAGGGTGACCTCCTCGCCGTTTTCGCTCAATACGGCGAGGTTGTCGATGTTAATCTCGTTAGGGACAAAGGCACCGGAAAATCCAAGGGTTTCGCGTTCCTTGCATATGAGGATCAAAGAAGCACAAATCTAGCTGTCGATAATCTGAATGGGGCACAAGTTTTAGGTAGAATTATTAGGGTGGACCATGTTGATAAGTATAAGAAAAAGGAAGAGGAAGATGAAGAGACAGAGCGGCAGAAGAGGGAGGCGCGTGGCGTTTGTCGTGCTTTCCAAAGAGGTGAATGTACTCGTGGAGCTAGCTGCAAGTTTTCCCATGATGAGCAAAGAGCTGCAAATACCGGTTGGGGTCGTGAGGAAGACAAACCAAAATGGGGGCACGACAAATTTGAGGGTCCCAAAAAAGAGAGAAGATCTGGGAACAATCAATCAAATCATATTCCAGAAACTAGGGATAGAGATTCCCATTTTAGAGCCCGTGACAATGATACTGGATTAGACAGCCAACCAAAGAGAAGTGATAGAAGAGAGAAGACGATGCAGTGGCATGGTGATAATGATAAATTTGAGGGAAGAGAAAATAACAGTAGAAGAGAAGAAAAGAGATCAAGAAGGCATGAAGATGGTGAATTTGAACATAAGTCGAGAGAAGATCAATATAGGAGAGAAGAAAAAAGATCAAGAAGGGACGATTATGATGGTATGGAATCTGAGCCAAAAGATCATCGCAAAAGGGAAGACAAGAGGTCAATAAAGTCAGATGATGTCGAGTTTGAACCCAATTTGAGAGATTCTGATATAAGGGTAGATAAAAGATCCCGGAGGAAGGATGGTGATGATTTTATAAGCAAGTCAAGAGAACCTCATAGTAACAAGGAAGACAGGAGATCACAAAAGCACATTGAAGATGAATCTGCACCAAGGTCGAGAGAAGATTATGATAGGAAGCAAGATAACAGATCATATAGAAATGATAGCGATGGAACAGAGTCAAAAGGAAGATATGATTTTGACAGGAGAGAAGAGAAAAAGTCAAGA 1182 0.4323 MNPLTLVKRIQNINSKEAALGIGEQASWHTKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQVLGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQRGECTRGASCKFSHDEQRAANTGWGREEDKPKWGHDKFEGPKKERRSGNNQSNHIPETRDRDSHFRARDNDTGLDSQPKRSDRREKTMQWHGDNDKFEGRENNSRREEKRSRRHEDGEFEHKSREDQYRREEKRSRRDDYDGMESEPKDHRKREDKRSIKSDDVEFEPNLRDSDIRVDKRSRRKDGDDFISKSREPHSNKEDRRSQKHIEDESAPRSREDYDRKQDNRSYRNDSDGTESKGRYDFDRREEKKSR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8605g00005 394 FunFam Uncharacterized protein 127 204 - -
Mupr8605g00005 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Mupr8605g00005 394 MobiDBLite consensus disorder prediction 154 394 - -
Mupr8605g00005 394 MobiDBLite consensus disorder prediction 160 394 - -
Mupr8605g00005 394 SUPERFAMILY RNA-binding domain, RBD 26 116 IPR035979 GO:0003676
Mupr8605g00005 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Mupr8605g00005 394 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Mupr8605g00005 394 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Mupr8605g00005 394 Coils Coil 115 135 - -
Mupr8605g00005 394 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Mupr8605g00005 394 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 258 - -
Mupr8605g00005 394 Gene3D - 6 111 IPR012677 -
Mupr8605g00005 394 Gene3D - 118 208 - -
Mupr8605g00005 394 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Mupr8605g00005 394 SMART rrm1_1 37 110 IPR000504 GO:0003723
Mupr8605g00005 394 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Mupr8605g00005 394 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8605g00005 Mupr-Chr8605 13259 16487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8605g00005 13 109 Eukaryotic Initiation Factors Gene Family AT2G36660 26.804 9.92e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8605g00005 K13107 - gmx:100792988 529.25