Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8595g00003 ATGGATACCCGCAAGAGGGGAAGACCCGAACCCGGCTTCGGCTTCAATAGTGGATTCAAGAAATCTAAGCAAGAAATGGAGTCGTTATCAAGTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGTTGCCCATTTGGTGAGGGCTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAATGCTGTTGCCCATATGATGAATCTAACACCTGCGGCACCTCCAGCATCAAGAAATGTTGCAGCCCTGCCACCTGTACCCAATGGGTCCACACCACCTGTTGTTAAGACCCGCATATGCAACAAGTTTAACAGTGCTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCTCATGGTGAATGGGAACTTGGCAAGCTTTTTGCTCCATCATTTGATGATCATCGTGCCATGGGACCCAACTCAGGAGGTCGTCATGCTGGTCGAATGGAGCCTCCTCCTGGTCCTGCTGCAAGTTTTGGTGCCAATGCCACGGCCAAGATCAGTGTAGAAGCTTCCCTTGCTGGAGCAATCATTGGCAAGGGTGGTGTGAACTCAAAACAGATCTGCCGCCAAACTGGAGCCAAACTTTCTATCCGAGAGCACGAATCTGACCCGAATCTTAGAAACATTGAACTTGAGGGAAGTTTTGAGCAAATTAAGGAAGCAAGTAACATGGTAAAGGATTTACTATTGACCCTGCAAATGTCTGCACCACCTAAATCAACCCCAGGTGTTCCTGGCGCACCTGGCCCTCATGGAAGCAATTTTAAGACGAAGCTGTGTGAGAATTTTGCAAAAGGATCTTGCACGTTTGGAGAAAGATGTCACTTTGCACATGGAGCGGCTGAATTGCATCAATTTTAG 882 0.4751 MDTRKRGRPEPGFGFNSGFKKSKQEMESLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLTPAAPPASRNVAALPPVPNGSTPPVVKTRICNKFNSAEGCKFGDKCHFAHGEWELGKLFAPSFDDHRAMGPNSGGRHAGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKSTPGVPGAPGPHGSNFKTKLCENFAKGSCTFGERCHFAHGAAELHQF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8595g00003 293 SUPERFAMILY CCCH zinc finger 260 291 IPR036855 GO:0046872
Mupr8595g00003 293 SMART c3hfinal6 101 126 IPR000571 GO:0046872
Mupr8595g00003 293 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Mupr8595g00003 293 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Mupr8595g00003 293 Gene3D - 93 131 - -
Mupr8595g00003 293 Gene3D - 262 292 - -
Mupr8595g00003 293 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Mupr8595g00003 293 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Mupr8595g00003 293 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Mupr8595g00003 293 SMART kh_6 167 237 IPR004087 GO:0003676
Mupr8595g00003 293 FunFam Zinc finger CCCH domain-containing protein 256 292 - -
Mupr8595g00003 293 MobiDBLite consensus disorder prediction 21 36 - -
Mupr8595g00003 293 SUPERFAMILY CCCH zinc finger 97 130 IPR036855 GO:0046872
Mupr8595g00003 293 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 149 IPR045877 GO:0003729
Mupr8595g00003 293 Pfam KH domain 171 233 IPR004088 GO:0003723
Mupr8595g00003 293 MobiDBLite consensus disorder prediction 1 36 - -
Mupr8595g00003 293 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Mupr8595g00003 293 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Mupr8595g00003 293 Gene3D K Homology domain, type 1 164 261 IPR036612 GO:0003723
Mupr8595g00003 293 CDD KH-I_AtC3H36_like 171 236 - -
Mupr8595g00003 293 FunFam Zinc finger CCCH domain-containing protein 94 131 - -
Mupr8595g00003 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Mupr8595g00003 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Mupr8595g00003 293 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 240 IPR036612 GO:0003723
Mupr8595g00003 293 ProSiteProfiles Zinc finger C3H1-type profile. 100 127 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8595g00003 Mupr-Chr8595 16596 20062 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr8595g00003 KH_1 3.5e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8595g00003 - - gmx:100803981 570.466