Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8595g00001 GGTGTTGTTTGCGTGTGTCGTGGTAGATCTGTGGTGGGTTTGGTCCGAAATCCGATGCATTTGTTTGCTCTTTTTGAAGTTAAGATTTTGATTTTTGAACACGTGAGATGGATGGAACATTGGATTGGTGATTTGGAGGGAGTTGGGTGCTTGCAGCAGCAATGGGTCGAACTGGGAAATGACAACCCGGATCTCGATTTTAACAACCCTGCTGGGTGGAGGGTTAGGTTGCTGGTGGTTGGTTGTACAAGCATGGCATCTAGTCATCCATTTTTTGATGATATACGGAGCAGATCTAGTGTTGACCCTCCTCAAACTGAACAGTTAACAGAAATTAGTGAACTTGTGAATGAGCCTTCGCAGCCTGTACTTAAACCTCATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTGTGCTTGAATGCTATGTACCCTCCAATCCACCAGTGTTCAAATGGTCACACTTTATGCTCTGGTTGCAAACCCAGAGTCCACGACCGGTGCCCTACATGTAGGCACGAGCTTGGCAATATCAGATGTTTGGCACTGGAAAAGGTGGCTGCATCATTAGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCTCAGGCATATTCCCATATTACAGCAAGCTAAAGCATGAATCTCTATGTCTATTTAGACCTTATAACTGTCCATATGCTGGTTCAGAGTGTTCTGTTATGGGTGATATACCTTACCTTGTGGCCCATCTAAAAGATGATCATAAAGTGGATATGCACAGTGGCTGTACTTTCAATCATCGCTATGTCAAAACAAATCCACAAGAAGTTGAAAACGCCACATGGATGTTAACGGTTTTCAGTTGCTTCGGGCAGTACTTCTGTCTACATTTTGAAGCTTTCCAGCTAGGAATGGCACCTGTCTACATAGCATTTTTGCGGTTTATGGGAGACGACAACGAGGCAAAGAACTACACCTACAGTCTCGAGGTGGGTGGAAATGGGAGGAAGATGATTTGGCAAGGGGTACCAAGAAGCATTAGGGATAGCCACCGCAAGGTTCGCGACAGTTTCGACGGTCTCATAATTCAGAGGAACATGGCTCTATTCTTCTCCGGTGGTGACCGGAAGGAGTTGAAACTGCGCGTCACCGGGAGAATCTGGAAAGAACAGTGA 1167 0.4559 GVVCVCRGRSVVGLVRNPMHLFALFEVKILIFEHVRWMEHWIGDLEGVGCLQQQWVELGNDNPDLDFNNPAGWRVRLLVVGCTSMASSHPFFDDIRSRSSVDPPQTEQLTEISELVNEPSQPVLKPHGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCSGIFPYYSKLKHESLCLFRPYNCPYAGSECSVMGDIPYLVAHLKDDHKVDMHSGCTFNHRYVKTNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8595g00001 388 CDD Sina 254 382 - -
Mupr8595g00001 388 ProSiteProfiles Zinc finger RING-type profile. 140 176 IPR001841 -
Mupr8595g00001 388 FunFam E3 ubiquitin-protein ligase SINAT5-like 98 191 - -
Mupr8595g00001 388 FunFam E3 ubiquitin-protein ligase SINAT5-like 249 381 - -
Mupr8595g00001 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 248 IPR013083 -
Mupr8595g00001 388 FunFam E3 ubiquitin-protein ligase SINAT3 192 248 - -
Mupr8595g00001 388 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 118 387 - -
Mupr8595g00001 388 Pfam Seven in absentia protein family 182 381 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mupr8595g00001 388 SUPERFAMILY RING/U-box 132 180 - -
Mupr8595g00001 388 CDD RING-HC_SIAHs 138 176 - -
Mupr8595g00001 388 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 249 381 IPR008974 GO:0005515
Mupr8595g00001 388 SUPERFAMILY TRAF domain-like 193 385 - -
Mupr8595g00001 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 191 IPR013083 -
Mupr8595g00001 388 ProSiteProfiles Zinc finger SIAH-type profile. 193 253 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8595g00001 Mupr-Chr8595 4445 8987 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8595g00001 116 388 C3H Transcription Factor Family AT2G41980 75.540 1.32e-159 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8595g00001 K04506 - gmx:100793457 595.89