Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr858g00008 ATGGGCAAGTCTAGCAAGAAATCATCTCTCAAAGTTGACGCCGCCGCAGCTGTGGTTCCTCCACCCAAATCTGCCAAGAAGGGTAACGAAAGTTTCTTGTATTTCGCAGCTTTGCCGACACGTGGCAAGAGGCAAGCGGAAGATGAAATTGAGAAGAAAGTGAGTGCAAAAAAGCAAAAGATAGAGGAGGTTGCTCAAAAGCAAAAGAAGGAAGCAAAGCTGCAAAAGAAGAAGGAAAGTAGTTCAGATGATTCTTCTTCGGAATCAGAAGATGAGAAACCTGCAGCAAAACCTGTTGTTCCTTCAAAGAAGACACCTGCAAAAAATGTCCCTCTAAGTACCCCAGCAAAGAAAGGCAAGCCAGCTAGCAGCTCCAGTTCTGAATCTGATTCTTCAGAATCTGAAGATGAGAAACCTGCAGCAAAACCTGCTGTTCCTTCAAAAAAGACACCTGCAAAAAATGTCACTCTAAGTACCCCAGCAAAGAAAGGCAAGCCAGCTAACAGCTCCAGTTCTGAATCTGATGATTCTTCTGAATCTGAAGATGAGAAACCTGCAGCAAAGCCTGTTCCTTCAAAGAAGACACCTGCTAAAAATGGCAATTTAAGTACCCCAGCTAAGAAAGGCAAGCCAGCTAGCAGCTCCAGTTCTTCTGAATCATCTGAAGATGACTCTTCTGATGAGGACGAAGTGACTGCAAAAAAGGGAGTGAAAGAAGTGGTTGCTGAGAAGCAAAAGAAGGAAGCAACAGTGCAAAAGAATAAGGTGGAAAGTAGTTCAGATGATTCTTCATCAGAATCTGAAGATGAGAAACCTGCAGCAAAAGTTGCCGTTCCGTCAAAAAGTCAACCTGCCAAAAATGGTACTGTAAGTATCCCAGCAAAGAAAGGAACACCAGCTGCTAGTTCAAGCTCTTCTGAATCATCAGATGATGATTCTGATGAGGATGAGGCACCAAAATCCAAGGTGGTTCCTGCTGCAGGCAAGAATGGACCTGCTCCTACAAAGAAAACTAAGCCAATTGAAAGCTCTGACTTGGATAGCTCTGAGTCTGATTCTGATAGCAGTGCTGACGAGGTTGAAAATAAGAAAAAACCCGCAACTACAAAGCTGCCTGCATTGTCAGTTGCTCCAGCTAAGAAAGTGGAAAGCTCAGATGATGAATCAAGTGAAAGCTCTGATGAAGACAGTGATGCAAAGCCAGCTGTAATTGCTGTGTCAAAGCCTTCTGCTGTTGCAAAAAAGAAGGTTGAGAGCTCCGATTCTGATGATAGCAGCTCTGATGAAGACAATGGGAAGATGGATGTCGATAAGGATGATAGTTCTGATGAAAGTGAAGAGCCACAAAAGAAAAAGACTGTGAAAGTTTCGAAAGAGAGCAGCGATAGTTCTGAAGATAGTGAGGAGGAAAGTGAGGAGAAACCTGCCAAAACTCCTCAGAAAAGGGTTAGGGATGTGGAGATGGTTGATGCTGCCTCATCTGGAAAGAAAGCGCCCAAAACCCCAGCTACACCTGCAGAAGAAATTGGTGGTTCGAAGTCACTATTTGTTGGAAATTTGCCATTTAGTGTTGAACGAGCTGATGTGGAAAACTTCTTCAAAGGTGCTGGAGAAGTTGTCGATGTTCGTCTTGCCACAGATGATGATGGGAGGTTTAAAGGATTTGGGCATGTTGAGTTTGCAACAGCGGAGGCTGCACAAAATGCCCTTGAGTTGAATGGACAAGAATTGTTTAATCGTCCACTCCGGCTTGATTTAGCTCGTGAAAGGGGTGCATACACCCCCAATAGCGGCGGCAACTGGAACAGCGCATCCCAGAAAGGTGGAAGAGGCCAGTCAACAGTATTTGTAAGGGGTTTTGATAAATCGCTTGGGGTAGATGAGATAAGAGAGAGTTTGCAAGAACATTTTGGTTCTTGTGGGAACATTACAAGGGTGTCAATTCCTAAAGATTATGAGTCTGGTGAAGTTAAGGGGTTTGCTTACATGGACTTCAGTGATGCTGGTGGCATGAACAAAGCTCTAGAACTTCATGAAACTGAACTTGGAGGTTATACCTTGGCAGTCGATGAAGCCAAACCTAGAGATAATCAAGGTTCTGGTGGTGGCCGATCTGGTGGTAGGGGTGGTGGTGGCCGATCTGGTGGTAGGGGTGGTGGTGGTCAATTTGGTGGAAGGGGCGGTAGTGGCGGCGGTGGTAGATTTGGTGGTGGAAGGGGGGGTGGTCGAGGAAGAGGTGGCGGTGGGAGGGGTCGTGGGGCTCCGAATAGACCAAGCCTTGCTCCGGAAGGCACAGGTATTAAATTTGTTGCTGCTGATAGATTGTTTGTACCGTTGTAA 2340 0.456 MGKSSKKSSLKVDAAAAVVPPPKSAKKGNESFLYFAALPTRGKRQAEDEIEKKVSAKKQKIEEVAQKQKKEAKLQKKKESSSDDSSSESEDEKPAAKPVVPSKKTPAKNVPLSTPAKKGKPASSSSSESDSSESEDEKPAAKPAVPSKKTPAKNVTLSTPAKKGKPANSSSSESDDSSESEDEKPAAKPVPSKKTPAKNGNLSTPAKKGKPASSSSSSESSEDDSSDEDEVTAKKGVKEVVAEKQKKEATVQKNKVESSSDDSSSESEDEKPAAKVAVPSKSQPAKNGTVSIPAKKGTPAASSSSSESSDDDSDEDEAPKSKVVPAAGKNGPAPTKKTKPIESSDLDSSESDSDSSADEVENKKKPATTKLPALSVAPAKKVESSDDESSESSDEDSDAKPAVIAVSKPSAVAKKKVESSDSDDSSSDEDNGKMDVDKDDSSDESEEPQKKKTVKVSKESSDSSEDSEEESEEKPAKTPQKRVRDVEMVDAASSGKKAPKTPATPAEEIGGSKSLFVGNLPFSVERADVENFFKGAGEVVDVRLATDDDGRFKGFGHVEFATAEAAQNALELNGQELFNRPLRLDLARERGAYTPNSGGNWNSASQKGGRGQSTVFVRGFDKSLGVDEIRESLQEHFGSCGNITRVSIPKDYESGEVKGFAYMDFSDAGGMNKALELHETELGGYTLAVDEAKPRDNQGSGGGRSGGRGGGGRSGGRGGGGQFGGRGGSGGGGRFGGGRGGGRGRGGGGRGRGAPNRPSLAPEGTGIKFVAADRLFVPL 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr858g00008 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 513 589 IPR000504 GO:0003723
Mupr858g00008 779 MobiDBLite consensus disorder prediction 228 275 - -
Mupr858g00008 779 MobiDBLite consensus disorder prediction 42 98 - -
Mupr858g00008 779 CDD RRM1_NUCLs 514 590 IPR034349 -
Mupr858g00008 779 SMART rrm1_1 514 585 IPR000504 GO:0003723
Mupr858g00008 779 SMART rrm1_1 614 690 IPR000504 GO:0003723
Mupr858g00008 779 SUPERFAMILY RNA-binding domain, RBD 610 722 IPR035979 GO:0003676
Mupr858g00008 779 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 184 656 - -
Mupr858g00008 779 Gene3D - 602 730 IPR012677 -
Mupr858g00008 779 MobiDBLite consensus disorder prediction 688 767 - -
Mupr858g00008 779 SUPERFAMILY RNA-binding domain, RBD 504 611 IPR035979 GO:0003676
Mupr858g00008 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 613 694 IPR000504 GO:0003723
Mupr858g00008 779 Coils Coil 43 78 - -
Mupr858g00008 779 MobiDBLite consensus disorder prediction 1 513 - -
Mupr858g00008 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 630 687 IPR000504 GO:0003723
Mupr858g00008 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 515 583 IPR000504 GO:0003723
Mupr858g00008 779 MobiDBLite consensus disorder prediction 151 174 - -
Mupr858g00008 779 FunFam Nucleolin 2 487 597 - -
Mupr858g00008 779 CDD RRM2_NUCLs 614 692 IPR034350 -
Mupr858g00008 779 MobiDBLite consensus disorder prediction 470 491 - -
Mupr858g00008 779 MobiDBLite consensus disorder prediction 414 462 - -
Mupr858g00008 779 Gene3D - 413 597 IPR012677 -
Mupr858g00008 779 MobiDBLite consensus disorder prediction 196 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr858g00008 Mupr-Chr858 67106 72334 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr858g00008 505 693 Eukaryotic Initiation Factors Gene Family AT1G22760 27.000 1.17e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr858g00008 K11294 - gmx:100779929 717.613