LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr8583g00001	ATGGCTCCGCCGCCGCCGGTGGAACACAACGGCGACTCCACCGCCACCGCCATAGAGTCTCAGAGATCTATTCCCACACCGTTTCTCACCAAAACCTTCCAACTCGTCGAGGACCAATCCATCGATGACGTTATTTCCTGGAACGAAGACGGATCCACCTTCATCGTTTGGAACCCTACCGTTTTCGCCAGAGACTTGCTTCCTAAATATTTTAAGCACAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACTTACGGATTCAGGAAGGTCGTACCTGATCGGTGGGAATTCACGAACGAGTTTTTCCGCAGAGGCGAGAAGCGGCTTCTGAGCGAAATCCAACGGCGGAAGATCTCGTCACCGGCGCATTCGCTGACGGCCGCTACGACCTTGGCGACCGCGACGGTCGCAGTTCCAACACCGATGCCGTTGACCGCGATACCGATTATATCGCCGTCCAACTCGGGCGAGGAGCAGGTGATATCGTCGAACTCGTCGCCGTCACGAGCGCCGGCGGAGCTTCTCGACGAGAACGAGAGGCTGAGGAAAGAGAACGTTCAGTTAACGAAAGAGCTCGCGGAGATGAGATCGCTCTGCAACAATATATATTCTCTGATGTCGAATTACGCCAACGGTAACGGAAACGGTAACCACCAAACAGACGGCGGCGCCGGTGGAAGCAGAGAGTCCGGCATGACGGCGGTGAAGCCGCTCGATTTGATGCCGGCGAAACGATGCTCCGCTGAGAATGCGGCGGAGACGGCGCCGGAGGAGATGAATCCTAAGTTGTTTGGTGTCGCGATTGGATTGAAGCGAGCGAGAGAGGGAGGAGGAAGTGGCGGAGAAAGAGAAGGTGGAGGAGGAGAGGAAGATACTCTGTTGCGCCTGCATCACCCGGGTCCAGCAGACGTCAAACCTGAGCCGTTGGATTGCCAAAATCATCGCGAAAATCAGGAAACGCCATGGTTGAGTCAGTGTCACCGGACAAATCAGAGGGTTTGTAACTGA	1011	0.5519	MAPPPPVEHNGDSTATAIESQRSIPTPFLTKTFQLVEDQSIDDVISWNEDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFTNEFFRRGEKRLLSEIQRRKISSPAHSLTAATTLATATVAVPTPMPLTAIPIISPSNSGEEQVISSNSSPSRAPAELLDENERLRKENVQLTKELAEMRSLCNNIYSLMSNYANGNGNGNHQTDGGAGGSRESGMTAVKPLDLMPAKRCSAENAAETAPEEMNPKLFGVAIGLKRAREGGGSGGEREGGGGEEDTLLRLHHPGPADVKPEPLDCQNHRENQETPWLSQCHRTNQRVCN	336

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr8583g00001	336	SMART	hsfneu3	24	117	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8583g00001	336	FunFam	Heat stress transcription factor B-4	20	118	-	-
	Mupr8583g00001	336	PRINTS	Heat shock factor (HSF) domain signature	66	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8583g00001	336	PRINTS	Heat shock factor (HSF) domain signature	28	51	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8583g00001	336	PRINTS	Heat shock factor (HSF) domain signature	79	91	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8583g00001	336	MobiDBLite	consensus disorder prediction	277	315	-	-
	Mupr8583g00001	336	ProSitePatterns	HSF-type DNA-binding domain signature.	67	91	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8583g00001	336	SUPERFAMILY	"Winged helix" DNA-binding domain	25	117	IPR036390	-
	Mupr8583g00001	336	Coils	Coil	179	199	-	-
	Mupr8583g00001	336	Pfam	HSF-type DNA-binding	28	117	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr8583g00001	336	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	20	214	IPR027725	-
	Mupr8583g00001	336	Gene3D	-	20	118	IPR036388	-
	Mupr8583g00001	336	MobiDBLite	consensus disorder prediction	274	317	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr8583g00001	Mupr-Chr8583	1964	3137	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr8583g00001	2	336	HSF	AT5G62020	50.568	4.84e-102	300

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Mupr8583g00001		HSF_DNA-bind	8.3e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr8583g00001	K09419		-	gmx:100812267	531.946