Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr857g00002 ATGCTTCAGATACCATCAATTCAAACCATATGTATCAAATTGGTCTATATAAAGAGATTGCTGGTGGCAATAGAAACCACAACAAGCATCTATTTTCAATTTTCTTTTTGTTTCTCCGTTTTTCTGACCACAATTATGACAAGGAAAAAGGTGAAACTCGTGTTCATTGCCAATGATTCTGCGAGGAAGGCTACATACAAGAAAAGGAAGCAGGGAATGCTGAAGAAGATTGAGGAACTCAGCATCCTCTGTGGCATTGAAGCATGTGCCATAGTCTATAGCCCCTATGATCCTGAGCCAGAGATTTGGCCATCCGAATGGGGTGTCCATAGGGTGTTGTTAAAGTTCAGGACTATGCCTGAATTTGAGCAGAGCAAGAAGATGGTGAGCCAAGAAAGTTTCATAGCACAAAGGATCGTGAAGGGTAACGAACAAATGAAGAAGCTTAAGATGGACAATAGGGAGAAGGAGATGAACATGTTCATGTATCAGTGCCTTAATGCAGGGAGGGTTCTGCCTGATACTAACATGACCGTGGCTGATTTCAATGATCTTTCATCTATCATTGATCAGAACCTCAAGAACATTAGCAGAAGGTTGGAAACGCTCAATGTTAATGAGATGACACCAAACCAGTTACCCCAGATGCAAACTCCAGCATTAGCAGTAGCCAAGACTGAAGAAATGACACTGCGGAACTATGGGCATGGGTTGGATATGAATGCTAACCCCATGCAAAGGGAGTTGTTTATGAACTTGATAAACGGTAATGGGGATGAGACAATAATGCCTCCATTTGGAGATGCTAATCTCCAACTCCAAATTGGCTTTTGGCCTAACTTGAGGAAGGTGAAACTCGCGTTCATAACCAATGATTCTGCAAGGAAGGCAACACACAAGAAAAGGAAAAAGGGAATGCTGAAGAAGATTGAGGAACTCAGCATCCTTTGTGGCATCGAAGCATGTGCCATAGTTTATAGCCCCTATGATCCTGAGCCAGATATTTGGCCATCCGAATGGGTCGTCCACAGGGTGCTGGAAAAGTTCAGGACTATGCCTGAATTTGAGCAGAGCAAGAAGATGGAGAACCAAGAGAGTTTCATAGCACAAAGGATCCAGAAGGGGAACGAACAGATGAAGAAACTTATGATGGACAATAGGGAAAAGGAGATGAGCATGTTCGTGTTTCAGTGCCTTGATGCAAGGAGGGTTCTGCCTCGTAATAACATGATCATGGCTGATTTCAATGATCTTTCATCGCTCATTGAACAGAACCTTAATGACATTAGCAAAAGGTTGGAAACCCTTAATGTTAATGAGGTAACACCAAACCAGTTACCCCAGATGCAATCTCTAGCGATAACAGTAGCCAAGACTGAACAAATGACACTGCTTAATGATGGCCATCAGTTGGATATGAATGCTAACCCCATCCAAAGGCAGCTCATCATATTCATGGCCCGGAGAAGGATGAAAAACGCCTTGATAGCCAATGATTGTGCAAGGAAGACATCATACATGCAAAGGAAGAAGTTACTGTTGAAGTTGGTGGAGGAACTCAGCACCCTCTGTGACATTGAAGCATGTGCTATAGTTTATATTCCCTATCATCGTGAGCCAAAGATTTGGCCATCCGAATCGGGTGCCCAAAATGTGGTGATAAAGTTGAGGAGTTTGCCTGAATGGGAGCAGAGCAAGAAGATGGTGAACCAAGAGGATTTTATCGCACAAAGTATCTTGAAGGGTAATGAGAAGATAAGGACTATAGTGAAGGAAAACAAGGAGACAGAGATGAGCTTGTTCATGTATGAGTGCCTTAATAAAGGGAGGGTTGAACCTCATGATAACATGACCACAGCTGATTTTAGTGATCTTTTATCGATCATTGAACAGAAGTTGAAGGACATTAGTACAAGGTTCCAAACGTTGAATCTTAATGAGATAACACTGTAA 1953 0.4235 MLQIPSIQTICIKLVYIKRLLVAIETTTSIYFQFSFCFSVFLTTIMTRKKVKLVFIANDSARKATYKKRKQGMLKKIEELSILCGIEACAIVYSPYDPEPEIWPSEWGVHRVLLKFRTMPEFEQSKKMVSQESFIAQRIVKGNEQMKKLKMDNREKEMNMFMYQCLNAGRVLPDTNMTVADFNDLSSIIDQNLKNISRRLETLNVNEMTPNQLPQMQTPALAVAKTEEMTLRNYGHGLDMNANPMQRELFMNLINGNGDETIMPPFGDANLQLQIGFWPNLRKVKLAFITNDSARKATHKKRKKGMLKKIEELSILCGIEACAIVYSPYDPEPDIWPSEWVVHRVLEKFRTMPEFEQSKKMENQESFIAQRIQKGNEQMKKLMMDNREKEMSMFVFQCLDARRVLPRNNMIMADFNDLSSLIEQNLNDISKRLETLNVNEVTPNQLPQMQSLAITVAKTEQMTLLNDGHQLDMNANPIQRQLIIFMARRRMKNALIANDCARKTSYMQRKKLLLKLVEELSTLCDIEACAIVYIPYHREPKIWPSESGAQNVVIKLRSLPEWEQSKKMVNQEDFIAQSILKGNEKIRTIVKENKETEMSLFMYECLNKGRVEPHDNMTTADFSDLLSIIEQKLKDISTRFQTLNLNEITL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr857g00002 650 SMART madsneu2 279 338 IPR002100 GO:0003677|GO:0046983
Mupr857g00002 650 SMART madsneu2 486 545 IPR002100 GO:0003677|GO:0046983
Mupr857g00002 650 SMART madsneu2 46 105 IPR002100 GO:0003677|GO:0046983
Mupr857g00002 650 SUPERFAMILY SRF-like 282 373 IPR036879 GO:0003677|GO:0046983
Mupr857g00002 650 FunFam agamous-like MADS-box protein AGL80 58 142 - -
Mupr857g00002 650 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 55 96 IPR002100 GO:0003677|GO:0046983
Mupr857g00002 650 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 288 329 IPR002100 GO:0003677|GO:0046983
Mupr857g00002 650 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 496 535 IPR002100 GO:0003677|GO:0046983
Mupr857g00002 650 CDD MADS_SRF_like 487 570 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr857g00002 650 ProSiteProfiles MADS-box domain profile. 46 94 IPR002100 GO:0003677|GO:0046983
Mupr857g00002 650 ProSiteProfiles MADS-box domain profile. 279 327 IPR002100 GO:0003677|GO:0046983
Mupr857g00002 650 SUPERFAMILY SRF-like 488 579 IPR036879 GO:0003677|GO:0046983
Mupr857g00002 650 FunFam Agamous-like MADS-box protein AGL80 498 583 - -
Mupr857g00002 650 FunFam agamous-like MADS-box protein AGL80 291 375 - -
Mupr857g00002 650 CDD MADS_SRF_like 282 363 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr857g00002 650 PANTHER MADS BOX PROTEIN 48 200 - -
Mupr857g00002 650 Gene3D - 58 139 IPR036879 GO:0003677|GO:0046983
Mupr857g00002 650 Gene3D - 291 374 IPR036879 GO:0003677|GO:0046983
Mupr857g00002 650 Gene3D - 499 578 IPR036879 GO:0003677|GO:0046983
Mupr857g00002 650 PRINTS MADS domain signature 68 83 IPR002100 GO:0003677|GO:0046983
Mupr857g00002 650 PRINTS MADS domain signature 48 68 IPR002100 GO:0003677|GO:0046983
Mupr857g00002 650 SUPERFAMILY SRF-like 47 139 IPR036879 GO:0003677|GO:0046983
Mupr857g00002 650 ProSiteProfiles MADS-box domain profile. 486 533 IPR002100 GO:0003677|GO:0046983
Mupr857g00002 650 CDD MADS_SRF_like 47 130 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr857g00002 Mupr-Chr857 6949 24968 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr857g00002 486 643 Type I MADS-box Gene Family AT5G48670 47.468 1.73e-36 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr857g00002 SRF-TF 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr857g00002 - - gmx:106797065 354.369