Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr857g00001 ATGCTGAATTATGGCCATGACTCGGATATGACTACTAACCTCATGGAAAGAATGACATTTAGTGGGACATTTGAATGTGCAAAACTAATTGGCACTATCACACAAAACAAAAGACCAGGGTTACGAGATCGTTGGTGGCAGGAAAAAGTACAAGCAACTACTCATTTCACTTGTATCTCATTTTGTTTCACCCATTTTGTGGTCAGCATCATATTCATGGCCAGGAGAAGGATAAAAAACGCATTGATAGCCAATGATTGTGCAAGGAAGACGTCATACATGAAAAGGAAGAAGTCACTAATGAAGATGGTGAAGGAACTGTGCACCCTTTGTAGCATTGAAGCATGTGCTATAGTTTATAGTCCCTATCATTGTGAACCAGAGATTTGGCCATCCGAATCGGGTGTCCTAAATGTGGTGCAAAAGTTCAGGACTTTGCCTGAATGGATGCAGACCAAGAAAATGCTGAACCAAGAGAGTTTCATTGCACAAAGTATCTTGAAGGGTGATGAGAGGATAAGGAATCTTGTGAAGGAAAACAAGGAGACAGAGATGACCATGTTCATGTATCAGTGCCTTAATACAGGGATGATTCAGCCTGGTAATAACATGAACACAACTGATTTAAATGATCTTTCATCAATCATTGAACATAAGCTAAAGGAAATTGGCACAAGGTTGGACTCGTTGAATGTTGATGAGATAATACCATACCAACTCCAGATGCCAATCCTTGCATCCCAGCTTGCAATGCAAACACCAGCATACAATCCCCAAATGCAAACCCTACCATACCAACCGCAACCCCAAATGCAAACCCTACCATACCAACCCCAACCCCAACCCCAAATGCATAATCAAACCCTACCCTACCAACTCCAAATGCAAACCTTACCATACCAACCCCAACCTGAAATGCAAACCCAAACCCTACCCTACCAACCCCAGGTGCAAACCCAAACTCTACCCTACCAATCCCAACTGCAAACTCAAACTCTACCCTACCAACCCCAACCCCAAATGCTGAATTATGACCATGGGTCGGATACTACTGCTAACCTCATGGAAAGCGACTTGTTTTTGGACTTTCTTAAT 1095 0.4256 MLNYGHDSDMTTNLMERMTFSGTFECAKLIGTITQNKRPGLRDRWWQEKVQATTHFTCISFCFTHFVVSIIFMARRRIKNALIANDCARKTSYMKRKKSLMKMVKELCTLCSIEACAIVYSPYHCEPEIWPSESGVLNVVQKFRTLPEWMQTKKMLNQESFIAQSILKGDERIRNLVKENKETEMTMFMYQCLNTGMIQPGNNMNTTDLNDLSSIIEHKLKEIGTRLDSLNVDEIIPYQLQMPILASQLAMQTPAYNPQMQTLPYQPQPQMQTLPYQPQPQPQMHNQTLPYQLQMQTLPYQPQPEMQTQTLPYQPQVQTQTLPYQSQLQTQTLPYQPQPQMLNYDHGSDTTANLMESDLFLDFLN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr857g00001 365 Gene3D - 86 164 IPR036879 GO:0003677|GO:0046983
Mupr857g00001 365 CDD MADS_SRF_like 74 157 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr857g00001 365 SMART madsneu2 73 132 IPR002100 GO:0003677|GO:0046983
Mupr857g00001 365 ProSiteProfiles MADS-box domain profile. 73 121 IPR002100 GO:0003677|GO:0046983
Mupr857g00001 365 PANTHER SERUM RESPONSE FACTOR HOMOLOG 75 280 - -
Mupr857g00001 365 SUPERFAMILY SRF-like 75 166 IPR036879 GO:0003677|GO:0046983
Mupr857g00001 365 FunFam agamous-like MADS-box protein AGL80 85 169 - -
Mupr857g00001 365 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 83 122 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr857g00001 Mupr-Chr857 999 6879 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr857g00001 73 230 Type I MADS-box Gene Family AT5G48670 51.266 2.77e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr857g00001 SRF-TF 5.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr857g00001 - - gmx:100794409 234.958