Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8573g00003 ATGCAAGGCAAAGAGGAGATAATGGTTCCAGTTCCAGTTCCACTTCCATCACCATCGGAAACCCAATTCAAGGGCCTTCTTTTCACCAATGCAAACGCTTCCGGCTCCTACGGAGAACAATGTTCCGATACCTTCTATACCAAACTCACTGACTTGTTGGACTCCTCTGGACTCACTCTCATTTTCAATGTCCGAGAAACATTGCTAGACTTGTACCTGTTTTACCTGGAGGTGACCAGAAGAGGAGGATATCACCAGGTTGGGCGAGAAAAGAAATGGGGTGAAGTTGTCCTTGCCCTGAAATTGGAAGGGAATAGTGTAAAGTTGTGTGCTCAAGTTGAAAAGCTTTACGCACATCTTCTCTACCAATTTGAGCAATTGTACTTCTACAGGCATCCTGCAAAGCAAGCTGGGTCTAGCAGCACCAAAGGTCCACTTAAGAAGAAGCGGAATTCAACAGCTATTGCTAGTTTACCTCATATAATGGACATTAAAGCTGCTCAGCTGGCCACAGAGATGTCCAAGGACTTCTCTTGCCACATGACAGGGGCTGGGATTGTGGAACAGCCTGTGCTTTTACCTTCACCCGCGAATGGCAAAGAAATGAAGAGACGCCGTGGTGCTCCGCTGGGGCGAAAGAATGCATATCAGATATTCCTCAAGCATGAATGTGCTCGATTGAAGACTTGTAATCAGGCCTTAGATGGCCAAAGAATCCTACGTGTGGCTATTGATGCATGGAGGAATATGTCTGAAATTGAGAAACAGCCATTTGTGGAGGAAAGCAAGAAGAACAAGGAAAAATTGAAGGAAGCAATGATTAGTCACAATAAACAGCAGAGCACCCAAGATACCAGGGAAGAGACGTGTCCTAGTCTGTCTGGTGATTACCATGTAACTTCACAACCTGAGGCAAATGACTCCCTTGTCAACAAAGCAACTGTTGGATTAGCTCTTAAAATGACCGGAAAAGCACCAAAGGATCCTTCATTTGTAATGGACTGGGATGCTTATTGTTCACTAGATTTACCAAGTAGGGAATCC 1044 0.4502 MQGKEEIMVPVPVPLPSPSETQFKGLLFTNANASGSYGEQCSDTFYTKLTDLLDSSGLTLIFNVRETLLDLYLFYLEVTRRGGYHQVGREKKWGEVVLALKLEGNSVKLCAQVEKLYAHLLYQFEQLYFYRHPAKQAGSSSTKGPLKKKRNSTAIASLPHIMDIKAAQLATEMSKDFSCHMTGAGIVEQPVLLPSPANGKEMKRRRGAPLGRKNAYQIFLKHECARLKTCNQALDGQRILRVAIDAWRNMSEIEKQPFVEESKKNKEKLKEAMISHNKQQSTQDTREETCPSLSGDYHVTSQPEANDSLVNKATVGLALKMTGKAPKDPSFVMDWDAYCSLDLPSRES 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8573g00003 348 ProSiteProfiles ARID domain profile. 39 129 IPR001606 GO:0003677
Mupr8573g00003 348 SMART hmgende2 208 278 IPR009071 -
Mupr8573g00003 348 MobiDBLite consensus disorder prediction 274 293 - -
Mupr8573g00003 348 Coils Coil 259 279 - -
Mupr8573g00003 348 SMART ARID_2 36 125 - -
Mupr8573g00003 348 SUPERFAMILY ARID-like 43 131 IPR036431 GO:0003677
Mupr8573g00003 348 Gene3D High mobility group box domain 206 293 IPR036910 -
Mupr8573g00003 348 MobiDBLite consensus disorder prediction 275 293 - -
Mupr8573g00003 348 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 199 289 - -
Mupr8573g00003 348 Pfam HMG-box domain 211 276 IPR009071 -
Mupr8573g00003 348 Gene3D - 30 149 IPR036431 GO:0003677
Mupr8573g00003 348 Pfam ARID/BRIGHT DNA binding domain 43 125 IPR001606 GO:0003677
Mupr8573g00003 348 SUPERFAMILY HMG-box 193 274 IPR036910 -
Mupr8573g00003 348 CDD HMG-box_SF 213 268 - -
Mupr8573g00003 348 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 209 277 IPR009071 -
Mupr8573g00003 348 SMART bright_3 40 130 IPR001606 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8573g00003 42 276 ARID Transcription Factor Family AT3G13350 22.814 2.16e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mupr8573g00003 ARID 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8573g00003 - - var:108325455 405.986