Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr856g00002 ATGTGGAAAACCAGTTGGCTCTATCACACAAAGCAGAAGACCAGCAACAAATGTTTACATGAAATAAAACCAGTCACCATCATGCCCCGGAAAAGCGTGAAAAACACATTCATAGCCAATGATTATGAAAGGAAGACATCATACATGAAAAGGAAGAAGTCATTTCTGAAGATGACGGAGCAACTCAGTACCCTCTGTGGCATTGAAGCATGTGCTATAGTTTATAGCCCCTATCATTGTGAGCCAGAGATTTGGCCATCCGAATCGGGTGTCCTAAATGTGGTGGGAAAGTTTAGGGATTTGCCTGAATGGGAGCAGAGCAAGAAGATGGTGAACCAAGAGGGTTTCGTTGCACAAAGTATCCTCAAGGGTAAAGAGAAGATGAGGAAACTTGTGAAGGACAACAAGGACACTGAGATTACCATGTTCATGTATGAGTGCCTTAATACAGGGAGGGTTCAGCCTTATAATAACATGACTACAGCTGATTTGAATTATCTTTCGTCGATCATTGAACAGAAGCTGAAGAATATTAATACAAGGTTGGAAACGTTGAATGTTATTGAGATGTCAAACCCTGCCTCCCAACCCCAATCCCAAATGCAAACAGCAGCACCTCATGAAATGCCGACACTACTGAATTATGGCCATGGGTCAGATATGAATGCTAACACCATGGAAAGCGAGTGGCTTTTGGACTTGCTTAATGTGACTATCATGAGCCAGAAAAGGGTGAAAAATGCATACATAGCCAATGATACTGAAAGGAAGACATCATACGGGAAAAGAAAGAGGTCACTGCTGAAGAAGACCGCAGAACTGAGCACCCTTTGTGGTATTGAAGCATGTGCTATAGTTTATAGCATCTATGATCCTGTGCCAGAGATTTGGCCATCTGAATCAGGTGTCCAAAATGTGTTGCGAAAGTTCAGGACTTTGCCTGAATGGGAGCAGAGCAAGAAGATGGTGAACCAAGAGGGTTTCATTGCACAAAGTATCCTGAAGAGTAAAGAGAAGATGGGGAAACTTGTGACGGACAACAAGGACACAGAGATGAGCATGTTCATTGTTCAGTGCCTCAATACAGGGAGGGTTCAGCCTCAAAATATCATGACCACAGCTGATATGAATAATCTTTCATCCATTATTGAGCAGAAACTCAAGGAAATTAGTACAAGGTTGGAAACGTTGAATGTTAATGAGATGACACCACACCAACCCGAAATACAAACATCAACACTGGTAGTAGCGCCTGAAGAAATGACACTGCTGAATTATGGCCATGCTTGGGATATGAATCCTAACCCTATCCAAAGGCAGTGCTTTATGGACTTGCTTAATGGTAATGTGGATGAGACAGTGATGCCTCTATTTGGAGATATTGTTGTTGTGGCAGTAGAAACCACAAGCAAGTCTTTTCAGTTCTTGTTTTGTTTCTCCGTTTTACTGGTGACCATCATGAGTCAGAAAAGAGTGAAAAATGCACTCATAGCCAATGATTCAGAAAGGAAGATATCATTCACAAAAAGGACGAAGTCGTTGCTGAAGAAGACGGGGGAAATCAGCACCCTTTGTGACATTGAAGCATGTGCCATAGTTTATAGCACATATAATCGTGAGCCAGAGATTTGGCCATCCGAATCGGGTGTCCGAAATGTGGTGGAAAAGTTCAGGACTATACCTGAATTTGAGCAGAACAAGAGAATGGAGAACCTAGAGAGTTTCATAACACAAAGGATCCAGAAGGCAAATGAGCAGAAGAAGAAACTTATGAAGGACAATAGGGAGAAGGAGATGAGCATGTTCATGTTTCAGTGCCTTAATGAAGGGAGGGTTCTGTCATTTAATAACATGACCGCTGCTGATTTGAATGATCTTTCATCTGTCATTGAACAGAAGCTGAAGGACATTAACAGAAGGTTGGAAATGCTGAATGTTAATGTGATGACAGAATCCCAACCCCAACCACACCAACAACCTCAAATGCAAACCCTACCATACCAACAACCTCAAATGCAAACCCTACCATACCAACAATCCGAAATACAAACCCTACCATATCAACAATCTCAAATACAAACCTTACTGTACCAACAATCTCAAATACAAACCTTACCGTACCAACAACCCCAAATGCAAACCCTAACGTACCAACCACAAATACAAACAGCAGAATCCCAAACCCAAATACAAATCCCTGCATACCATCCCCAGGTGCAAACAGCACCAGCAACCACGCTGCTGAATTATGGCCATGGGTCGGATATGAATGCTAACCCCTTGGAAAGGCAGTGGTTTATGGACTTGCAGAATGGTAATGTGGATGAGACAGTAACGCCTCTATTTGGAGATAAAGCACATGGTTGTCATAATATTTGA 2379 0.422 MWKTSWLYHTKQKTSNKCLHEIKPVTIMPRKSVKNTFIANDYERKTSYMKRKKSFLKMTEQLSTLCGIEACAIVYSPYHCEPEIWPSESGVLNVVGKFRDLPEWEQSKKMVNQEGFVAQSILKGKEKMRKLVKDNKDTEITMFMYECLNTGRVQPYNNMTTADLNYLSSIIEQKLKNINTRLETLNVIEMSNPASQPQSQMQTAAPHEMPTLLNYGHGSDMNANTMESEWLLDLLNVTIMSQKRVKNAYIANDTERKTSYGKRKRSLLKKTAELSTLCGIEACAIVYSIYDPVPEIWPSESGVQNVLRKFRTLPEWEQSKKMVNQEGFIAQSILKSKEKMGKLVTDNKDTEMSMFIVQCLNTGRVQPQNIMTTADMNNLSSIIEQKLKEISTRLETLNVNEMTPHQPEIQTSTLVVAPEEMTLLNYGHAWDMNPNPIQRQCFMDLLNGNVDETVMPLFGDIVVVAVETTSKSFQFLFCFSVLLVTIMSQKRVKNALIANDSERKISFTKRTKSLLKKTGEISTLCDIEACAIVYSTYNREPEIWPSESGVRNVVEKFRTIPEFEQNKRMENLESFITQRIQKANEQKKKLMKDNREKEMSMFMFQCLNEGRVLSFNNMTAADLNDLSSVIEQKLKDINRRLEMLNVNVMTESQPQPHQQPQMQTLPYQQPQMQTLPYQQSEIQTLPYQQSQIQTLLYQQSQIQTLPYQQPQMQTLTYQPQIQTAESQTQIQIPAYHPQVQTAPATTLLNYGHGSDMNANPLERQWFMDLQNGNVDETVTPLFGDKAHGCHNI 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr856g00002 792 SUPERFAMILY SRF-like 490 581 IPR036879 GO:0003677|GO:0046983
Mupr856g00002 792 PRINTS MADS domain signature 509 524 IPR002100 GO:0003677|GO:0046983
Mupr856g00002 792 PRINTS MADS domain signature 524 545 IPR002100 GO:0003677|GO:0046983
Mupr856g00002 792 PRINTS MADS domain signature 489 509 IPR002100 GO:0003677|GO:0046983
Mupr856g00002 792 FunFam agamous-like MADS-box protein AGL80 252 336 - -
Mupr856g00002 792 SMART madsneu2 487 546 IPR002100 GO:0003677|GO:0046983
Mupr856g00002 792 SMART madsneu2 240 299 IPR002100 GO:0003677|GO:0046983
Mupr856g00002 792 SMART madsneu2 28 87 IPR002100 GO:0003677|GO:0046983
Mupr856g00002 792 ProSiteProfiles MADS-box domain profile. 487 539 IPR002100 GO:0003677|GO:0046983
Mupr856g00002 792 SUPERFAMILY SRF-like 243 333 IPR036879 GO:0003677|GO:0046983
Mupr856g00002 792 FunFam agamous-like MADS-box protein AGL80 40 124 - -
Mupr856g00002 792 ProSiteProfiles MADS-box domain profile. 28 76 IPR002100 GO:0003677|GO:0046983
Mupr856g00002 792 SUPERFAMILY SRF-like 30 121 IPR036879 GO:0003677|GO:0046983
Mupr856g00002 792 PANTHER MADS BOX PROTEIN 246 394 - -
Mupr856g00002 792 CDD MADS_SRF_like 30 112 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr856g00002 792 ProSiteProfiles MADS-box domain profile. 240 288 IPR002100 GO:0003677|GO:0046983
Mupr856g00002 792 FunFam agamous-like MADS-box protein AGL80 499 583 - -
Mupr856g00002 792 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 37 77 IPR002100 GO:0003677|GO:0046983
Mupr856g00002 792 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 249 288 IPR002100 GO:0003677|GO:0046983
Mupr856g00002 792 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 497 538 IPR002100 GO:0003677|GO:0046983
Mupr856g00002 792 CDD MADS_SRF_like 490 571 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr856g00002 792 CDD MADS_SRF_like 243 324 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr856g00002 792 Gene3D - 499 582 IPR036879 GO:0003677|GO:0046983
Mupr856g00002 792 Gene3D - 252 329 IPR036879 GO:0003677|GO:0046983
Mupr856g00002 792 Gene3D - 41 118 IPR036879 GO:0003677|GO:0046983
Mupr856g00002 792 Coils Coil 566 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr856g00002 Mupr-Chr856 5890 17533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr856g00002 487 644 Type I MADS-box Gene Family AT5G48670 54.430 4.50e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr856g00002 SRF-TF 9.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr856g00002 - - gmx:100795996 287.345