Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr8553g00001 | ATGGGGCAAGGGCAATCCAAAGACGAGTTGCTCTATCAGCAAGTCAGTTATGGAAACATCGAAGGAATCAAAACCCTTCACAGAGAAGGTGCAATCCTAGAGTGGAGGGACAAAGAAGCAAAGACCCCCTTGATTGTTGCTTGCATGAATCCTCAGCTTTATAATGTTGCCAAAACTTTGATAGAACTTGGAGCCAATGTCAATGCATACCGTCCTGGTCGACATGGTGGGACTCCATTGCATCATGCAGCTAAAAGGGGCTTTGATAGTATTGTTAAGTTACTTCTTTTGCATGGAGCCAATCCTTTAGTCTTGAATGATGATTGTCTAACTGCTCTTGAGGTTGCCAGGGCCAAAGGGCACAGCAATGTTGTTCGTGCGATTGAGAGTCATCTATGCTTGTTCTCCGGTTGGTTGCGCGAGTTTCATGGACCTGGGTTTCTAGAAGTAGTAGCTCCTCAGTTGGTATCGAAAAAAGTGTGGGTATCATGTGACATTTGGGTGGTTATTTTACCAGTTGGCTCCCGTAATCTTACTAGACCTTTCAAGTTGGAGCTTGCCATCTATTCTAATTTGCAGGAGGCACAACCACGTACAATTATTGCACTGTGGAAGGCCAATTTACAAGAACCAAAGCTTCACCAGTCTGATCCGTCATTGACAATCGTTGATAGCAATAAAACACGTGTTAAACTTGGCCCTGCAAGTGACAACGATAAACAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGCAAGTCCAGGATTCTTGCAAAATAATGTGGCTACAGGTCCACCCACAGCACCACCAGCTGCTGAAGACACAGAGTTGGCTATGGCCATCAGTGCATCCCTTCAGTCTGCCATGCAGGAGAGGCCACCCTTTCCTGATGCCCAGCCAAACTTTGAAGCAAGCTCTTCAAGCACTGCAGTGAATACAGGCAATCATGGTTTTCTGGGCACATCAAATCCAAATACAAGTGATAATGAGTTGGTACATGAAGCTAACCTAGGTGGCAAAGGTCAGCACCTCCAAAGCCATGTCAATGACTCTGATTCTGCTGGCCTTACTGCTAGTGGTTTGGATTTCAATCCATCAGCACCGCCAATCGCTGATGGCCCCATTCATTATCCATCAATTGATTCAAGCCCTGTTGATATGGCATCTCCAGATGTTGAGAAGCTACCTAAAGAAGAAGAAAAAAATGCTAGTGCAAACAGTTCATCATGCGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTGAAAGCAAAGAAATGGGGTTGCCCTGTTTGTCGAGCTAAGATAGTCCAGTTGTGTTAA | 1383 | 0.4526 | MGQGQSKDELLYQQVSYGNIEGIKTLHREGAILEWRDKEAKTPLIVACMNPQLYNVAKTLIELGANVNAYRPGRHGGTPLHHAAKRGFDSIVKLLLLHGANPLVLNDDCLTALEVARAKGHSNVVRAIESHLCLFSGWLREFHGPGFLEVVAPQLVSKKVWVSCDIWVVILPVGSRNLTRPFKLELAIYSNLQEAQPRTIIALWKANLQEPKLHQSDPSLTIVDSNKTRVKLGPASDNDKQQLTWFSNACKGIPQASPGFLQNNVATGPPTAPPAAEDTELAMAISASLQSAMQERPPFPDAQPNFEASSSSTAVNTGNHGFLGTSNPNTSDNELVHEANLGGKGQHLQSHVNDSDSAGLTASGLDFNPSAPPIADGPIHYPSIDSSPVDMASPDVEKLPKEEEKNASANSSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKAKKWGCPVCRAKIVQLC | 460 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr8553g00001 | 460 | SUPERFAMILY | RING/U-box | 413 | 458 | - | - | |
| Mupr8553g00001 | 460 | Gene3D | - | 79 | 132 | IPR036770 | - | |
| Mupr8553g00001 | 460 | SMART | ANK_2a | 39 | 69 | IPR002110 | GO:0005515 | |
| Mupr8553g00001 | 460 | SMART | ANK_2a | 75 | 104 | IPR002110 | GO:0005515 | |
| Mupr8553g00001 | 460 | ProSiteProfiles | Ankyrin repeat region circular profile. | 39 | 69 | - | - | |
| Mupr8553g00001 | 460 | MobiDBLite | consensus disorder prediction | 304 | 333 | - | - | |
| Mupr8553g00001 | 460 | ProSiteProfiles | Ankyrin repeat profile. | 39 | 72 | IPR002110 | GO:0005515 | |
| Mupr8553g00001 | 460 | SUPERFAMILY | Ankyrin repeat | 9 | 133 | IPR036770 | - | |
| Mupr8553g00001 | 460 | ProSiteProfiles | Ankyrin repeat region circular profile. | 75 | 101 | - | - | |
| Mupr8553g00001 | 460 | PANTHER | ROLLING PEBBLES, ISOFORM B | 25 | 257 | - | - | |
| Mupr8553g00001 | 460 | SMART | ring_2 | 414 | 452 | IPR001841 | - | |
| Mupr8553g00001 | 460 | Pfam | Ankyrin repeats (many copies) | 60 | 116 | IPR002110 | GO:0005515 | |
| Mupr8553g00001 | 460 | MobiDBLite | consensus disorder prediction | 292 | 333 | - | - | |
| Mupr8553g00001 | 460 | ProSiteProfiles | Zinc finger RING-type profile. | 414 | 453 | IPR001841 | - | |
| Mupr8553g00001 | 460 | MobiDBLite | consensus disorder prediction | 384 | 404 | - | - | |
| Mupr8553g00001 | 460 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 390 | 460 | IPR013083 | - | |
| Mupr8553g00001 | 460 | ProSiteProfiles | Ankyrin repeat profile. | 75 | 107 | IPR002110 | GO:0005515 | |
| Mupr8553g00001 | 460 | Pfam | Zinc finger, C3HC4 type (RING finger) | 412 | 457 | - | - | |
| Mupr8553g00001 | 460 | Gene3D | - | 3 | 78 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr8553g00001 | Mupr-Chr8553 | 1574 | 6968 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mupr8553g00001 | 2 | 121 | MAP Kinase Kinase Kinase | AT3G58760 | 32.500 | 6.88e-07 | 49.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mupr8553g00001 | - | - | gmx:100789309 | 763.451 |