Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr850g00013 ATGGCAAAAATCGCTATGGAAAACTCAGACAACGAGGAACCCGACAAGAAGAGGCCTCATCTCACCTCTGTCTCTTCCCGCATCCCTCGAAACTCCACCAACTCTCCCACCAGCAACAAAACCGCTGATGCAGGAGTCTTACAGTTCCAGAATCAGCAGCTTGTTCAACAGATAGACATCCAAAAACATGCTTTGCATGATCTTGAAGAAAAAATTAGAGAATTAAAAGGAAAGCAAAGTTCTTATGACGACTTGTTAATTGCATTGAACCAACTGTGGATTCAGTTGGTTGACGATATGATTCTTCTTGGAATACGAGCTGGGAGAGGCAAAGGCAAAGACACATTGCACCGTTTGACTTACATTGCTAATCCTCAAGGTACTTTCATTAGGCACACACAAGTTATTCAAGAGACTGACTTGTCTTACTCTCTAGGTTCACTTCCTTTGTGTCCTGCCGAGGATATATTTCTATGTAGATTAATCCAGAAAGATTCTATTAAAGGAATCAGTGATGATGAGATCGTTAGTTATGTTGAGGATGCCCTTGCTTTTCGTCAGTCATATACAAGGGAGTTGTTGAAACTCCTGCAAGATACCATTGGTGCTCAGATGGAAAGAGCAGGCAGTGTAGCTCAGGTTTTACATGGAGATTTATCTTCAGAAGATGCTATAATCCAAATGACTAAGATTGATGACATGACGAAAGAGGAGGCAAATAATTTACAAGAAGTGATTGATGCTCTCCATGCAAAACATAAAGAGTATACTGTTGGTATTCAAAATTCTATCAATGGGTGCTTAGAAGATCAATCTGACATTAAACGCCTTGCAGGTGAGCTTGATGAGATTATTGCCGAACTTGAAGAGAGTAGAAGAAAGCTAGTCAATCTTCAAATGCAAAGGGATACAGCAATAGGGATGAATTCCCCCAATGCAGATGCGGTGAATGGAAACCTGTCTCCTGAAAAACCTGCAGACAGGACCATGGGTTTGCGTGAGTTGAAGGATTCAATTGAGGAAGCAAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCACAGGAAGACAATCAGACCTTGACAAAGCAATTCCAAGATCTTCAGAATGAACTGAAAGATGATAAGTATGTACGCTCTTCCCGAATATACTCTTTGGCTAATGATCAACTTCAACATTGGATTACTGAATTGGACCAATATAGAACTTTGGTAGAGTCTCTGCAGGCTGGCAGTGTTCATGTTGCAAAATGGGAGAATGAATTAAATTTGAAATTGGAGTCTGCTGATACTGCAAGGCACATCCTTGACAATTCTGACCATAGGATTGATGAACTAGAGCTTCAGTTGCAGAAGTGTATTATTGAAAAGAATGATCTTGAAATTAAGTTGGAAGAAGCTAAACAGGATACTGGGAGAAAAGATATCAAATCAGAGTTTCATGTTATGGCTTCAGCCTTATCTAAAGAAATGGGGATGATGGAAGCTCAATTAAAGCGATGGAAAGATGCAGCTCATGAGGCTGTATCATTACGTGAGAAAGCACATTCACTAAGAGAAGCGTTGAGCATGAAGACAGGCGAAGTTAAGAGCCTTGCAAACAAATGTGCTGAACAGGTTTTGGAAATCAAGTCTTTAAAAACATTGACTGAGAAGTTACAAAAGGAGAATCAGCAATTAGAATTTGTTCTGGATATGCATGGCCAGGAAAATTATGATAAAAGATATTCAGAAGTTAGAGAATCTGAAAGTAAAGCTCACTCTCAAGCTGAAATACTGCAAAATGCTTTAGATGAACATAGCCTAGAGTTGAGAGTAAAAGCCGCCAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCTGCAGAAGCTGAAATAGAGGACTTGAGGGCCAAGCTGGATGCATCTGAGAGGGATATTTTGGAACTGACTGAGGCTGTTAAAGTTAAAGATGCTGAGGCAGAGGCATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTTGGACCAGGTGATCGAGAGAGATGACTATAATATTAAGCTTGTATCAGATAGTGTGAAGACAAAACAGACGCATAACACTTTACTGTCTCAGAAGCAGGCATTAGCTAAGCAGCTTCAACAAATTAATTCTTCAATAGAAAATTCAAAGATGAGGATTACACACAGTGAAGAGCAGATGAAAGCTATTCTATCTGAAGCCATTAAATGTAATCAAGAAGAAAAGCACCTTGCAGTCACCCTGGAATTTGCAAAGTGGGAATTGGCTGATGCAGAGAAGGAATTGAAGGTGCTCAAGTCTGCTGTTTCCTCTTCAGAAAAAGAGTACGATCAAATTCAGAAAGATACGGAAGCTATTGAAGTGGAATTGAATAATGAAAGGAGTTTACGGAAGAAGCTTGAGGAAGATCTAAGGGAATTGAACAGCAAAATTTCTGAGTTGACATCTGAAACTGGAGAGACCACAATACAAAAACTCGAAAAAGAAATAAGGATTTGCAAGAACATGATCAAGTGTACTGTCTGCACTGATCGTCCAAAGGAGGTTGTGATTGTCAAGTGCTATCATCTATTCTGCAATCCATGCATTCAGAGAAATCTAGAGCTTCGTCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAAAGTGATGTTCGCTTTGTTAAGATATGA 2718 0.3981 MAKIAMENSDNEEPDKKRPHLTSVSSRIPRNSTNSPTSNKTADAGVLQFQNQQLVQQIDIQKHALHDLEEKIRELKGKQSSYDDLLIALNQLWIQLVDDMILLGIRAGRGKGKDTLHRLTYIANPQGTFIRHTQVIQETDLSYSLGSLPLCPAEDIFLCRLIQKDSIKGISDDEIVSYVEDALAFRQSYTRELLKLLQDTIGAQMERAGSVAQVLHGDLSSEDAIIQMTKIDDMTKEEANNLQEVIDALHAKHKEYTVGIQNSINGCLEDQSDIKRLAGELDEIIAELEESRRKLVNLQMQRDTAIGMNSPNADAVNGNLSPEKPADRTMGLRELKDSIEEAKIVDADRLSELQDAQEDNQTLTKQFQDLQNELKDDKYVRSSRIYSLANDQLQHWITELDQYRTLVESLQAGSVHVAKWENELNLKLESADTARHILDNSDHRIDELELQLQKCIIEKNDLEIKLEEAKQDTGRKDIKSEFHVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKAHSLREALSMKTGEVKSLANKCAEQVLEIKSLKTLTEKLQKENQQLEFVLDMHGQENYDKRYSEVRESESKAHSQAEILQNALDEHSLELRVKAANEAEAACEQRLSAAEAEIEDLRAKLDASERDILELTEAVKVKDAEAEAYISEIETIGQAYEDMQTQNQNLLDQVIERDDYNIKLVSDSVKTKQTHNTLLSQKQALAKQLQQINSSIENSKMRITHSEEQMKAILSEAIKCNQEEKHLAVTLEFAKWELADAEKELKVLKSAVSSSEKEYDQIQKDTEAIEVELNNERSLRKKLEEDLRELNSKISELTSETGETTIQKLEKEIRICKNMIKCTVCTDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr850g00013 905 Pfam Zinc finger, C3HC4 type (RING finger) 852 894 - -
Mupr850g00013 905 Coils Coil 664 684 - -
Mupr850g00013 905 Coils Coil 438 472 - -
Mupr850g00013 905 Coils Coil 713 733 - -
Mupr850g00013 905 ProSiteProfiles Zinc finger RING-type profile. 853 891 IPR001841 -
Mupr850g00013 905 Coils Coil 545 568 - -
Mupr850g00013 905 MobiDBLite consensus disorder prediction 1 22 - -
Mupr850g00013 905 Coils Coil 274 301 - -
Mupr850g00013 905 SMART ring_2 853 891 IPR001841 -
Mupr850g00013 905 MobiDBLite consensus disorder prediction 1 41 - -
Mupr850g00013 905 SUPERFAMILY RING/U-box 852 896 - -
Mupr850g00013 905 Coils Coil 51 85 - -
Mupr850g00013 905 CDD RING-HC_Bre1-like 845 901 - -
Mupr850g00013 905 Coils Coil 608 649 - -
Mupr850g00013 905 MobiDBLite consensus disorder prediction 307 327 - -
Mupr850g00013 905 Coils Coil 353 373 - -
Mupr850g00013 905 ProSitePatterns Zinc finger RING-type signature. 868 877 IPR017907 -
Mupr850g00013 905 MobiDBLite consensus disorder prediction 24 41 - -
Mupr850g00013 905 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 834 904 IPR013083 -
Mupr850g00013 905 Coils Coil 762 831 - -
Mupr850g00013 905 PANTHER RING FINGER PROTEIN-RELATED 11 905 IPR013956 GO:0004842|GO:0010390
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr850g00013 Mupr-Chr850 108489 118734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr850g00013 790 900 RAD5 or RAD16-like Gene Family AT5G05130 24.615 7.64e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr850g00013 K10696 - gmx:100796610 1528.07