LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr8508g00001	ATGGGTAGCAGAAGTAGAACGGTAAACGTTAACACTAAGGACACTAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTAGTTCAATGGGCATAGAAGCAACTAATGTTCATCCTTCCCGAATTTCTGAATTTGGAACCCTAGAGCAATCTCTTGGATTTCGCATTGAGGATACCATCAATCATAGCAGAAATCCGGTGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCCGATATTCAATTTGGTGCTTTGAATAAGGTACAGTCAATTGCAACATCAGATATAAACCTCTCTGCTGCTATTACTGGATCTCAGGCATTGCCATTTCAAAAGGACTCACAACAAACTCTGGCTTCGACATCTGCTGGTCAGCGCGAGAACTGGGGAGAGACCAACATGGCTGATGGTAGCCCCAGGACTGATACTTCAACAGATGATACAGAAGACAAAAATCAAATGCCTGAAAGGGGTGAATCCAGTGATAGATCAAAAGATAAATCAGATCAAAAGACATTAAGACGGCTTGCACAAAATCGTGAGGCTGCCAGGAAAAGTCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAAGAGCTCCAGCGAGCTCGCCAGCAGGGAATATTTATCTCAAGTACTGGAGATCAGGCCCAATCAATGAGTGGAAATGGTGCTATGGCATTTGATGTAGAGTATGCACGATGGTTAGAAGAGCATAATAGGCAAACAAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGGGATATTGAACTTCGTACCATTGTTGACAATTTCATGACGCAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGGTTTCGCTCATCTGAAATCCTCAAGCTCCTTGTAAGTCAGTTGGAGCCTTTAACTGAGCAACAATTAATGGGCATCTACAACTTGCAACAGTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGAATGGATGCATTGCAGCAATCACTCTCTGAGACATTGGCTAATGGTTCACCCAGCTCATCAGGCTCCTCAGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACTCTTGAGGGGTTTCTTCGCCAGGCTGACAACCTGCGGCAGCAAACATTGCAACAAATGCTTAGGATATTAACAACCAGGCAATCGGCTCGAGCTCTTCTCGCGATAAGTGATTACTTCTCGCGGCTGCGAGCGCTGAGTTCTCTGTGGCTAGCCAGGCCAAGGGAATGA	1392	0.4511	MGSRSRTVNVNTKDTNKVVNGMPSYAPPLPSSSSMGIEATNVHPSRISEFGTLEQSLGFRIEDTINHSRNPVFNQMKSNSQALGADIQFGALNKVQSIATSDINLSAAITGSQALPFQKDSQQTLASTSAGQRENWGETNMADGSPRTDTSTDDTEDKNQMPERGESSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSEILKLLVSQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPSSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE	463

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mupr8508g00001	463	Coils	Coil	197	224	-	-
Mupr8508g00001	463	Pfam	Seed dormancy control	261	336	IPR025422	GO:0006351\|GO:0043565
Mupr8508g00001	463	Gene3D	-	177	229	-	-
Mupr8508g00001	463	SMART	brlzneu	174	237	IPR004827	GO:0003700\|GO:0006355
Mupr8508g00001	463	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	181	196	IPR004827	GO:0003700\|GO:0006355
Mupr8508g00001	463	ProSiteProfiles	DOG1 domain profile.	243	460	IPR025422	GO:0006351\|GO:0043565
Mupr8508g00001	463	PANTHER	TRANSCRIPTION FACTOR TGA9	120	463	-	-
Mupr8508g00001	463	MobiDBLite	consensus disorder prediction	1	32	-	-
Mupr8508g00001	463	MobiDBLite	consensus disorder prediction	120	148	-	-
Mupr8508g00001	463	MobiDBLite	consensus disorder prediction	120	180	-	-

Showing 1 to 10 of 17 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr8508g00001	Mupr-Chr8508	3730	10833	Dispersed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr8508g00001	141	463	bZIP Transcription Factor Family	AT3G12250	74.924	9.30e-175	491

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Mupr8508g00001		DOG1	1.5e-29	No_clan

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr8508g00001	K14431		-	gmx:778136	807.749

Showing 1 to 1 of 1 entries

Previous1Next