Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8494g00001 ATGGGTCGTCGTAAAATTGAAATTAGGGAAGTGAACGACCCTAACACAAAGCAAGTTACATTTTCAAAGAGGCGAACCGGGCTATTTAAAAAGGCTAATGAATTGTCGATCTTGTGTGGAGCACAAGTTGGCATTGTTGTGTTCTCACCAGGGAACAAGCCCTACTCATTTGGGCATCCCAGTGTTGAAGCGGTTGCAGAGAAATTTCTTGAAGAAAATGTTGGTGAATCAAGTGGTGTACAGGCATCAAATGAAGTCGGTGGTGACCTGAATGGTCTGAATGAACAACTATCTGAAGTTCAAGCCCAAATACGCCACGAAGAAAAGAAGGGCAAGGACCTTGATCAACGACTCAAACAACATCAACTCACACATCCCTCTAACTATAAAGAGTTGCAACTCTCATATTTAGAGATTCAGCGCAAGGTCAAGGACTATCTTGATGCCATCGAGGTCTCTGAGTCTATGATGCTCCTTGCCCAACAACCCGTTGTTGGAGTCACAAAACAAGGTTTCCTTCACCCTAAAACCTTGTCTCTTAGGGACCCTGTGATGCTTCAGAAAATAGAGAGGTGTTCTCTTAGAAATCCTGAGATAGTTAGACAAGAATAA 612 0.4297 MGRRKIEIREVNDPNTKQVTFSKRRTGLFKKANELSILCGAQVGIVVFSPGNKPYSFGHPSVEAVAEKFLEENVGESSGVQASNEVGGDLNGLNEQLSEVQAQIRHEEKKGKDLDQRLKQHQLTHPSNYKELQLSYLEIQRKVKDYLDAIEVSESMMLLAQQPVVGVTKQGFLHPKTLSLRDPVMLQKIERCSLRNPEIVRQE 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8494g00001 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Mupr8494g00001 203 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Mupr8494g00001 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr8494g00001 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr8494g00001 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr8494g00001 203 Coils Coil 90 117 - -
Mupr8494g00001 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr8494g00001 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr8494g00001 203 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Mupr8494g00001 203 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Mupr8494g00001 203 PANTHER MADS BOX PROTEIN 3 135 - -
Mupr8494g00001 203 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8494g00001 Mupr-Chr8494 5829 6836 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8494g00001 1 162 Type I MADS-box Gene Family AT2G34440 42.614 1.14e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr8494g00001 SRF-TF 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8494g00001 - - gmx:100791127 233.032