Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8477g00001 ATGTCTGTGCCATTGGAGCAAGGCTATGTAGGCTTATCAGAGGTTCCTGCAATGGAAGATTCTAACAAGTTTTGTGAGAGGACTAGTGGTGGCTTGAACCTGAAGGCTACTGAGCTGAGGCTTGGCTTGCCAGGCTCTGAGTCACCAGAGAGGGATGAAGGTGGTGGTGTGGAGGACAAGAACGTGCACTCTTTAGGCATGGTCAAGAGTTTGGTGTCTGGGGCCAAGAGGGGTTTCTCAGACACCATTGATGTGGGTTCTGGGAAGTGGCTTCTCTCTGGAAGTGGTGGATCTGAGGTGGGGTTGGGTAAAGATGCTGGCTTGTTCTCTCCAAGGGCTGCCAAGGCTGAGTGTACCAACCAACCAACATCTGTTGTCAAAGATAAAGTTTCTCACTCTCCAAACCCATTGAATGAGAAGAAGCCTCAGACAACTGCTCCTGCTGCAAAGGAACAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCCAATCAGCCCCCAAAGAGTGATGATGATGCAGAAGCCAAGTCTGGATGCCTTTATGTGAAAGTTAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGACCTCAAAAACTTTGGCACTTACATGGAACTGTCTTCAGCACTGGAAAAGATGTTTACTTGTTTTACAATCAGTCAATGTGGTTCCCATGGAGTTTCTGGTCAGGATAAGTTGAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGACTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGATAGAGTATTACCTTTAAGCACATCATACAAGAGTCCAGAGGCAAGTGCAGGGCACAAGCTGGGGCTTCTCTTGCTTGAATATGTATAA 966 0.4669 MSVPLEQGYVGLSEVPAMEDSNKFCERTSGGLNLKATELRLGLPGSESPERDEGGGVEDKNVHSLGMVKSLVSGAKRGFSDTIDVGSGKWLLSGSGGSEVGLGKDAGLFSPRAAKAECTNQPTSVVKDKVSHSPNPLNEKKPQTTAPAAKEQVVGWPPIRSFRKNSMANQPPKSDDDAEAKSGCLYVKVSMDGAPYLRKVDLKNFGTYMELSSALEKMFTCFTISQCGSHGVSGQDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLDRVLPLSTSYKSPEASAGHKLGLLLLEYV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8477g00001 321 ProSiteProfiles PB1 domain profile. 184 286 IPR000270 GO:0005515
Mupr8477g00001 321 Pfam AUX/IAA family 37 292 IPR033389 -
Mupr8477g00001 321 MobiDBLite consensus disorder prediction 45 59 - -
Mupr8477g00001 321 MobiDBLite consensus disorder prediction 41 60 - -
Mupr8477g00001 321 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 291 IPR003311 GO:0005634|GO:0006355
Mupr8477g00001 321 MobiDBLite consensus disorder prediction 120 142 - -
Mupr8477g00001 321 MobiDBLite consensus disorder prediction 120 153 - -
Mupr8477g00001 321 Gene3D - 178 297 - -
Mupr8477g00001 321 SUPERFAMILY CAD & PB1 domains 181 285 - -
Mupr8477g00001 321 FunFam Auxin-responsive protein 179 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8477g00001 Mupr-Chr8477 389 3377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8477g00001 128 306 B3 DNA Binding Superfamily AT3G61830 30.000 7.47e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mupr8477g00001 AUX_IAA 2e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8477g00001 K14484 - gmx:100803754 486.878