LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr8476g00001	ATGCCATGGTCTTTTGCCTCGTCCTACGTCCCTCCACAACTCCGCGCTAACAGCGTTCCACCTTTCTCCGACGACTCCACCCGTGGCGGTAGACCGCGTGGCCGGGGATTCTCCCGCCCGCGCGAGCCTTCCTACCAAAACAGCCGGTTCTCCGCGGACGAGACATCAAACGGCGATGGTATCAACTTCGACGCGTACGAGTCAGTTCCCGTGGAGGCGAGTGGCAAGAACGTGCCGCCGCCGGTGAACGCGTTCGATGAAACGGACCTGGAAGAAGGTTTGAAGAGGAACATAGAGCGATGCAAGTACGTGAAACCCACGCCCGTTCAGCGTCACGCGATTCCCATTGCGAGCGCGGGCCGCGACTTGATGGCGTGCGCCCAGACTGGCTCGGGTAAAACGGCGGCGTTTTGCTTTCCCATCATATCCGGGATTCTCAAGGCTCGTTCCGCTTCTGGGTTTTCCTCAATGCCTCGTGCTGCCGTTGTTGCATACCCCACTGCGCTTATTCTGTCCCCCACCAGGGAGTTGTCGTGCCAGATACGTGATGAAGCCAACAAATTTGCTAATCAAACTGGGGTGAAGGTTGTGGTTGCCTATGGTGGGGCTCCTATTTCTCAGCAGCTGCGCCATTTGGAGAAAGGCGTTGACATATTGGTTGCAACTCCTGGGCGTTTGGTGGATATTATTGAGAGAGAAAGGGTTTCGTTGGCGAAGATAAAGTATCTTGCATTGGACGAGGCAGATCGAATGTTGGACATGGGTTTTGAGCATCAAATACGAAAGATTGTGGAGCAAATGCACATGCCCCCGCCAGGTGTTAGACAGACATTGCTGTTTAGTGCGACTTTCCCTAATGATATACAGAAGCTTGCATCGGACTTTTTATCCAACTACATATTCCTGTCTGTTGGAAGGGTTGGATCGAGTACTGAACTGATTGTGCAAAAGATTGAACTCGTACAGGATATGGACAAAAGAGACCATCTTGTTGATCATCTCCGTCGTCAAAAGGCTCGTGGAGCAAATGGAAAGCATGCTTTGACTCTTGTATTTGTTGAAACAAAGAAGGGAGCGGATGCTCTAGAAAGTTGGTTGTGCAGAGGTGGGTTTCCAGCTATTGCCATACATGGTGACAAAGTTCAAATGGAAAGGGAAAGAGCTTTAAGATCTTTCAAATCCGGTTCGACCCCGATTTTGGTTGCAACTGATGTTGCATCGCGGGGGTTGGACATCCCGCATGTGGCTCATGTTATAAACTTTGACTTGCCTAGAGACATAGATGACTACGTACATAGAATTGGAAGAACAGGCCGTGCAGGCAAATCTGGTTTAGCCACTGCCTTCTTCAGCGACAAGAACAGCCCTCTTGCAAAGGCCCTTGTTGGACTTTTGCAGGAAGCAAAGCAGGAAGTACCGTCTTGGCTCAGTCAATATGCTGATTATTCACCATCTGGCGGTCGTGCTCGTGGCCATGCTGCTCAGCGTTACAGCAGTGCTAGTTACGGTGGTCGTGATTTTCGAAATGCCACTGCACCCGAGGTGCACAATTACTACTGCAACAGTACTCATGGCAAAGCAGATCGCGGTGTAGACTCTTCCTATGACATGCAATACTCCAATAATTATGGGGGTCGTGATTTTAGAAATGCCACTGAATCTGAGGTCCAGAATTACAACAGCTACAGTACTAATGGTAATGACAATGCAGACCATGCTGTAGAGGCTTGCAGGGATACCTCTTATGAAATGCAAAACTCCAATGGAGATTCCTCCTATAATCACACTGATGATTTGTATGGAGGTGGTATAGTTGAAGAAGATGGGCCGCGTGGGTATGCATCAATTATTCCCACTGGATGGGACTAG	1869	0.4987	MPWSFASSYVPPQLRANSVPPFSDDSTRGGRPRGRGFSRPREPSYQNSRFSADETSNGDGINFDAYESVPVEASGKNVPPPVNAFDETDLEEGLKRNIERCKYVKPTPVQRHAIPIASAGRDLMACAQTGSGKTAAFCFPIISGILKARSASGFSSMPRAAVVAYPTALILSPTRELSCQIRDEANKFANQTGVKVVVAYGGAPISQQLRHLEKGVDILVATPGRLVDIIERERVSLAKIKYLALDEADRMLDMGFEHQIRKIVEQMHMPPPGVRQTLLFSATFPNDIQKLASDFLSNYIFLSVGRVGSSTELIVQKIELVQDMDKRDHLVDHLRRQKARGANGKHALTLVFVETKKGADALESWLCRGGFPAIAIHGDKVQMERERALRSFKSGSTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSDKNSPLAKALVGLLQEAKQEVPSWLSQYADYSPSGGRARGHAAQRYSSASYGGRDFRNATAPEVHNYYCNSTHGKADRGVDSSYDMQYSNNYGGRDFRNATESEVQNYNSYSTNGNDNADHAVEACRDTSYEMQNSNGDSSYNHTDDLYGGGIVEEDGPRGYASIIPTGWD	622

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr8476g00001	622	Pfam	Helicase conserved C-terminal domain	329	441	IPR001650	-
	Mupr8476g00001	622	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	326	480	IPR001650	-
	Mupr8476g00001	622	MobiDBLite	consensus disorder prediction	41	62	-	-
	Mupr8476g00001	622	Gene3D	-	40	303	IPR027417	-
	Mupr8476g00001	622	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	167	455	IPR027417	-
	Mupr8476g00001	622	MobiDBLite	consensus disorder prediction	10	24	-	-
	Mupr8476g00001	622	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	58	480	-	-
	Mupr8476g00001	622	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	114	302	IPR014001	-
	Mupr8476g00001	622	MobiDBLite	consensus disorder prediction	1	63	-	-
	Mupr8476g00001	622	FunFam	ATP-dependent RNA helicase RhlB	305	483	-	-
	Mupr8476g00001	622	Pfam	DEAD/DEAH box helicase	107	291	IPR011545	GO:0003676\|GO:0005524
	Mupr8476g00001	622	SMART	ultradead3	102	317	IPR014001	-
	Mupr8476g00001	622	CDD	DEADc_DDX3_DDX4	85	308	IPR044763	GO:0003724\|GO:0005524
	Mupr8476g00001	622	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	83	111	IPR014014	GO:0003724
	Mupr8476g00001	622	SMART	helicmild6	360	441	IPR001650	-
	Mupr8476g00001	622	FunFam	Probable ATP-dependent RNA helicase DDX4	46	304	-	-
	Mupr8476g00001	622	CDD	SF2_C_DEAD	314	450	-	-
	Mupr8476g00001	622	Gene3D	-	304	482	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr8476g00001	Mupr-Chr8476	3441	6559	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr8476g00001	83	474	Eukaryotic Initiation Factors Gene Family	AT3G13920	33.756	2.95e-58	199

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr8476g00001	K11594		-	gmx:100791226	894.034