LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr8452g00001	GGCGACCGACTCATTCACCTTAGGACAAGTCGAAGCCAAAAGGTTGGGTGCGAATCCAGTGCTCCAGGTTGCAAGATACAACCCCATGCACTCTACCTTGATTCATGTGAAAATCCGGGCTTGTGCGCGACGAGACTGAGAGCGGTATTACGAGGTATGTGGAGAATGGGAAATAATGGTACTGAAAAGATCCCAAACAATAACAGCGCTGGAAGTTCAGAAACCACCATCGAGATAAAGATTAAAACATTGGATTCTCAAACTTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGTTATCTGAACGACAACGCTTAATTTGCCAAGGGAAAGTTCTAAAGGATGATCAGCTCCTGTCTGCCTATCATGTTGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGATCTACCACCACCAGGAAGTGTGCCCAATCATTCAGTGACTGAACCAAATTCAAGCACAAGCCATGGTCACAGTAGTCAAGTCGCCCCTGGTGTTTTTATTGAAACTTTCAATGTGCCTGTTCAGGGTGACGGAGTTCATCCTGAAATCAATAGGATTGTTTCTGCTGTTCTAGGATCCATCGGACTTCCAAATTTTGCGAGTGGCGGTGAAGGGATTGATGTCAGGGGTCTGAGGGAAATCCTTCGGAAGATCATATGGCTCAAGATTCTTCAACCCAGGTTGAAACCGATGTTGGGACATCACGAAGACCAAGTGGTTCTGATCCAAGCTCCCCAAATCCAAAACGTCAAAAGATGGAGTGATATAGAGGACAATGTTGAGTTTGTGGTCGTGGAAGATTGTGATCATGAGAAACAGAATTCGGGTGCGGCCATCCAACCATCTCTTCTGCAACTCTCGCCGACAACTCCCTTCACCATGGCCGAACAGACCGAGAAGGCTTTTTTGAAGCAACCAAAAGTATTTCTCAGCTCGAAAAAATCTGCGAAGGGAAACCGACCTGGAAAGGGTGGTAACCGCTTTTTCAAATCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATTGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAGTGTTTCGATCCGGGGCCGTATCTTAGCTGGAACATGCCACAGTGCTAAGATGAACAGGACTATTATTGTTAGGAGGAATTATCTCCATTTTATTAAGAAGTATCAGAGATACGAGAAGAGGCATTCGAATATTCCTGCTCATATGTCACCTTGCTTCCGTGTGAAGGAAGGAGATCATGCCACTCTCAAAGACAGTGAGATTCAATGTGTTGAAAGTGATCCCAGCTGGATCGTCTACCGGTGCAAAGAAGGCATTCACTGGAATTTGATCTTTGATTTCCAATGT	1407	0.4577	GDRLIHLRTSRSQKVGCESSAPGCKIQPHALYLDSCENPGLCATRLRAVLRGMWRMGNNGTEKIPNNNSAGSSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSVPNHSVTEPNSSTSHGHSSQVAPGVFIETFNVPVQGDGVHPEINRIVSAVLGSIGLPNFASGGEGIDVRGLREILRKIIWLKILQPRLKPMLGHHEDQVVLIQAPQIQNVKRWSDIEDNVEFVVVEDCDHEKQNSGAAIQPSLLQLSPTTPFTMAEQTEKAFLKQPKVFLSSKKSAKGNRPGKGGNRFFKSIGLGFKTPREAIEGTYIDKKCPFTGSVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHMSPCFRVKEGDHATLKDSEIQCVESDPSWIVYRCKEGIHWNLIFDFQC	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr8452g00001	469	SMART	ubq_7	77	148	IPR000626	GO:0005515
	Mupr8452g00001	469	PANTHER	LARGE PROLINE-RICH PROTEIN BAG6	64	224	-	-
	Mupr8452g00001	469	Pfam	Ubiquitin family	79	149	IPR000626	GO:0005515
	Mupr8452g00001	469	MobiDBLite	consensus disorder prediction	148	176	-	-
	Mupr8452g00001	469	FunFam	40S ribosomal protein S11	311	443	-	-
	Mupr8452g00001	469	ProSiteProfiles	Ubiquitin domain profile.	77	152	IPR000626	GO:0005515
	Mupr8452g00001	469	Pfam	Ribosomal protein S17	384	434	IPR000266	GO:0003735\|GO:0005840\|GO:0006412
	Mupr8452g00001	469	SUPERFAMILY	Ubiquitin-like	72	157	IPR029071	-
	Mupr8452g00001	469	SUPERFAMILY	Nucleic acid-binding proteins	378	437	IPR012340	-
	Mupr8452g00001	469	PRINTS	Ubiquitin signature	129	150	IPR019956	-
	Mupr8452g00001	469	PRINTS	Ubiquitin signature	87	107	IPR019956	-
	Mupr8452g00001	469	PRINTS	Ubiquitin signature	108	128	IPR019956	-
	Mupr8452g00001	469	FunFam	Large proline-rich protein BAG6	69	162	-	-
	Mupr8452g00001	469	Gene3D	-	302	440	-	-
	Mupr8452g00001	469	Gene3D	-	70	170	-	-
	Mupr8452g00001	469	MobiDBLite	consensus disorder prediction	161	176	-	-
	Mupr8452g00001	469	Pfam	Ribosomal_S17 N-terminal	314	382	IPR032440	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr8452g00001	Mupr-Chr8452	7692	25760	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr8452g00001	311	436	Cytoplasmic Ribosomal Protein Gene Family	AT5G23740	88.095	1.13e-69	217

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr8452g00001	-		-	gmx:100783070	291.582