Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8406g00004 ATGGCTTTCAGTCTCCGCAGCGTTGAAGAGATCTTCAAGGACTATAGTGGCAGAAGAAACGCTCTTATTCGTGCTCTCACTGACGACGTTGATGAATTTTACAACCTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTATGGACATATGAATGAGGTCTGGGAAGTTACTCTGCCAGTGGAGGAAGTTCCACCGGAGCTCCCTGAGCCTGTTCTCGGAATCAATTTTGCTAGGGATGGTATGAACCGCAAGGACTGGATTTCTCTGGTTGCTGTGCATAGTGATTCATGGTTGCTTTCTGTAGCCTTTTACCTTGGAGCTCGTCTTAACCACATTGAAAGCATCTGCTGGCATATGGTTCCTTCTATTGATGGCTTACCTCATTTTTATGGCAGGAATCGTTTATTTAGTTTGATTAATGATCTTCCACCCGTTTTTGAAGTTGTGACTGACAGGAAACCAATTAAGGACAAGCCCACTGTGGATAGTGGAAGCAAGTCTCGTGGAAGCACCAAGTCTGAGAGATCTAGTGATGGGCAGGTTAGAAGCAACCCAAAGTTTGCAGACGAGGGTCATGAGGATGATGAAGATGAGCATAATGAAACACAGTGTGGAAGCTGCGGTGGAAATTACAATGTAAATGAATTTTGGATCTGCTGCGATACATGTGAGAGGTGGTTCCATGGGAAGTGTGTTAAGATTACCCCAGCAAAGGCTGAGAGCATAAAGCAATATAAATGTCCATCATGCAGCCTGAAGCGGGGCAGGCCCTAG 774 0.4548 MAFSLRSVEEIFKDYSGRRNALIRALTDDVDEFYNLCDPDKENLCLYGHMNEVWEVTLPVEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLSVAFYLGARLNHIESICWHMVPSIDGLPHFYGRNRLFSLINDLPPVFEVVTDRKPIKDKPTVDSGSKSRGSTKSERSSDGQVRSNPKFADEGHEDDEDEHNETQCGSCGGNYNVNEFWICCDTCERWFHGKCVKITPAKAESIKQYKCPSCSLKRGRP 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8406g00004 257 ProSitePatterns Zinc finger PHD-type signature. 204 250 IPR019786 -
Mupr8406g00004 257 MobiDBLite consensus disorder prediction 185 201 - -
Mupr8406g00004 257 MobiDBLite consensus disorder prediction 156 201 - -
Mupr8406g00004 257 MobiDBLite consensus disorder prediction 156 175 - -
Mupr8406g00004 257 CDD PHD_AL_plant 203 253 IPR044104 -
Mupr8406g00004 257 PANTHER CPG BINDING PROTEIN 5 256 IPR045104 GO:0006355|GO:0042393
Mupr8406g00004 257 FunFam PHD finger alfin-like protein 196 252 - -
Mupr8406g00004 257 Pfam Alfin 7 112 IPR021998 GO:0006355|GO:0042393
Mupr8406g00004 257 Pfam PHD-finger 204 251 IPR019787 -
Mupr8406g00004 257 ProSiteProfiles Zinc finger PHD-type profile. 201 253 IPR019787 -
Mupr8406g00004 257 SMART PHD_3 203 251 IPR001965 -
Mupr8406g00004 257 SUPERFAMILY FYVE/PHD zinc finger 193 255 IPR011011 -
Mupr8406g00004 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 251 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8406g00004 Mupr-Chr8406 26247 30541 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8406g00004 6 256 Alfin-like Transcription Factor Family AT5G05610 68.254 2.31e-106 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mupr8406g00004 Alfin 1.1e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8406g00004 K26274 - gmx:100782478 388.652