Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8406g00002 ATGGCTTCCAAACCCCGCACCGTTGAAGAGATCTTCAAGGACTATAGCGCCCGAAGAACCGCTCTTATTCGCGCTCTCACTATTGACGTTGATGAGTTTTACAGCCTCTGTGAACCAGATAAGGATAACTTGTGCCTCTATGGATATCCAAATGAGGCCTGGGAAGTAACTCTGCCATCAGAGGAACTTCCGCCGACGCTCCCTCAGCCAGCTTCTGGAATCAATTTTGCTAAGAAAGATAAGACGCGCAGGGAGTGGCTTTCTCTGGTTGCTGTGTTTAGTGATTCCTGGTTGTTTTCCGTGGCTTTTTTCCATGGAATTCGCCTTAACCGCAGTGAAAGGAAACGTTTATTTGGTTTGATCAATGATCGTCCCACTGTTTTTGAAGTTGTGACTGACAGGAAACCAATTAAGGACAAGCCCACTGTGGATAGTGGAAGCAAAACTCGGGGAATCACCAAGAGATCTAGTGGTGGGAAAGTTGAAAGCATCCCAAAGTTTGCAGATGAGGGTAATGAAGATGATGAATATGAGCATCATGAAACACTTTGTGGAAGCTGCGGTGGAAATTACAATGCAAATGAGTTTTGGATTGGGTGCGATATATGTGAGTGGTGGTTCCATGGGAAGTGTGTTATGATTACCCCTGCAAAGGCTGAGAGCATAAAGCAGTATAAATGTCCATCATGCACCTTGAGGCGGGGCAGACCATCATAG 717 0.4589 MASKPRTVEEIFKDYSARRTALIRALTIDVDEFYSLCEPDKDNLCLYGYPNEAWEVTLPSEELPPTLPQPASGINFAKKDKTRREWLSLVAVFSDSWLFSVAFFHGIRLNRSERKRLFGLINDRPTVFEVVTDRKPIKDKPTVDSGSKTRGITKRSSGGKVESIPKFADEGNEDDEYEHHETLCGSCGGNYNANEFWIGCDICEWWFHGKCVMITPAKAESIKQYKCPSCTLRRGRPS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8406g00002 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 231 IPR013083 -
Mupr8406g00002 238 FunFam PHD finger alfin-like protein 174 232 - -
Mupr8406g00002 238 CDD PHD_AL_plant 183 233 IPR044104 -
Mupr8406g00002 238 SMART PHD_3 183 231 IPR001965 -
Mupr8406g00002 238 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Mupr8406g00002 238 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Mupr8406g00002 238 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Mupr8406g00002 238 Pfam PHD-finger 184 231 IPR019787 -
Mupr8406g00002 238 SUPERFAMILY FYVE/PHD zinc finger 173 235 IPR011011 -
Mupr8406g00002 238 MobiDBLite consensus disorder prediction 139 165 - -
Mupr8406g00002 238 PANTHER CPG BINDING PROTEIN 4 236 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8406g00002 Mupr-Chr8406 7823 17113 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8406g00002 2 236 Alfin-like Transcription Factor Family AT5G05610 66.102 9.67e-104 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mupr8406g00002 Alfin 7.8e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8406g00002 K26274 - gmx:100782478 395.586