Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8405g00001 ATGTCTTCTCTTAAAAGTAACATTCACTTTTTCAAGAGGATTGAGGAAGACACCCTTCGAAATGGGGAGCTGAGGATTCCTCGAAGTTTTGTGAAGAAATGTTGGGGAGAAATGTCAAATCCATTACACCTTCTGCTTCCTGACGGTGGTAGGTGGGATGTGAATTGGAAGAAACTTAATGTTGACGTTTGGTTAATCGATAAATGGAAGAAATTTGCAGAATTCTACTCTTTGGATCACGACCATCTTTTGGTGTTTAAATATAAGGGAGAGTCACAGTTTCAGGTCGTAATACTTGATCAAAGTGGCTTGGAAATGGGGTACCCTATGATGGAAGCAACTTTTGATGGTGAAGGGAATGGTAATTCTTTACGCAACAGTAAGAGGGAAAAATCTCCCTTACCATATTCTCGTTCTACTAAGAAGGTCAAAACCAACCCAAGAAAGGAAGAACCTAATAGTTGTCCCAGCCAAGATGTTAAAACTAAAAGTGCTCAAACTGGAAAGACTAATGCAAGTGTTTTTGAAAAAACGAAGCCCAAAAAGATAGGTGGAAAAAGCACTGTGCATGCAAATAGGAGATGGTCAAAGTCTAAGGCTATTCAAAATGAGGGGTCAAGTGCTTTAGAAAGAGCTATGACTTTCCGTTCTGATAATCCCTTCTTCGTTTGTGAAATGCATCCATCATACATTCAAAAATATTTGCTGGTACCCCTCTTCCGAAATAGACTAGCTATGCCAGGCAATTTCATAACTGAAGACAAACGAGACGAGGATGAAAACATTACTCTTTGGGTTTCTGAGAGAAGTTGGCTAGTCAAGTTCTGTTATAATCGTTGCAGTGGACAAATAAATCTTAGTACTGGTTGGAAGAATTTTGTAATGGAAAATAACTTGGAAATAGGGGATGTTTGTGTTTTCGAGAAAACTAAGATACAGGGAATTTCATTTAGAGTTTTTATTTACCGAGATGGAGAAGAATCAAGTCCTTCCGTGTTTCCAGCTTATGGTGAAGGAGCAAACAGAAGCAATCAAACAGTGCTTGGAAATAATTTTGCTTGGGGCAGTGTTGAAAATCCAAAAATGTCAGAGAATCACTTCACCCTCTCAATCAAGCCGAATGAATTCTATTATAAGTCCATACCAAGGAACTTCTTAAGAAAGTATGACATTGAAAACATGAATGATGTGATGCTGCGAGTTGGGATGAAATCATGGCATGTCAAGTTAGACGGTTACGGCAGATTCACGTCGGGTTGGTCTGAATTTATGAGTCAATGTAATTTGAAGGCTGGAGATGTTTGTCGCTTTGACTTGATTGATGACAAGCAATTTGTGTTTCAAGTTCGACCAGTGTCCATTGAGGTATGGAACCCAAATGGGAAATACAGAGTTGTTAGCACAAAATCAATGCCGGGAACTCGTTGGATCAATCTTCTCATTCAAAATGATTGTCGCCTTGAAATATGTACCGAGAAGAAAACGATACTGTCAGTTGAAGACATTATTGCTTTGATTGGTGACAAGTGCGATGGAGTTATAGGACAGCTGACTGAGGACTGGGGAGAAGAGTTGTTCTCTGCCTTGAGCAGAGCGGGTGGCAAAGCTTTCAGTAACATGGCTGTTGGTTATAACAATGTGAATGTTGATGCTGCAAACAAGTATGGTGTTGCTATTGGAAATACTCCTGGAGTGCTCACTGAGACTACAGCAGAGCTGGCAGCTTCACTGTCTTTGGCAGCTGCCAGAAGGATAGTTGAGGCAGATGAGTTCATGAGGGCAGGATTATATGATGGATGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGACAAACTGTTGGTGTAATTGGTGCTGGTCGTATTGGATCCGCGTATGCAAGAATGATGGTTGAGGGGTTCAAGATGAACCTAATTTACTTCGATCTCTACCAGGCCACACGTCTAGAGAAGTTTGTCACAGGCATGTTGCTACCAACTTATGCTTCATTCTTGAAAGCAAATGGTGAAACTCCAGTGACTTGGAAAAGGGCAGCAACCATGGATGAGGTCCTCCAGGAAGCAGATATAATTAGTCTTCATCCTGTCTTGGATAAAACCACTTATCATCTAGTCAACAAGGAAAGACTAGCTAAGATGAAAAAGGAAGCAATTCTTATAAACTGCAGTAGAGGGCCTGTTATTGATGAAGTTGCACTTGTGGAGCATTTAAAACAGAACCCAATGTTTCGAGTAGGCCTTGATGTGTTTGAGGATGAGCCCTACATGAAACCCGGGCTTGGAGAGTTGAAGAATGCCATTGTGGTACCCCACATTGCGTCTGCCTCAAAGTGGACCCGTGAGGGAATGGCTACACTAGCAGCTCTAAATGTGCTGGGGAAGATTAAAGGGTACCCAGTTTGGTTTGATGCCAACAAGGTGGAACCATTCCTTAATGAGAATGCTCGACCTCCAGCTGCATGCCCAAGCATTGTTAATGCAAAAGCCCTAGGTTTGCCAAGTTCAAAGCTATAA 2517 0.4148 MSSLKSNIHFFKRIEEDTLRNGELRIPRSFVKKCWGEMSNPLHLLLPDGGRWDVNWKKLNVDVWLIDKWKKFAEFYSLDHDHLLVFKYKGESQFQVVILDQSGLEMGYPMMEATFDGEGNGNSLRNSKREKSPLPYSRSTKKVKTNPRKEEPNSCPSQDVKTKSAQTGKTNASVFEKTKPKKIGGKSTVHANRRWSKSKAIQNEGSSALERAMTFRSDNPFFVCEMHPSYIQKYLLVPLFRNRLAMPGNFITEDKRDEDENITLWVSERSWLVKFCYNRCSGQINLSTGWKNFVMENNLEIGDVCVFEKTKIQGISFRVFIYRDGEESSPSVFPAYGEGANRSNQTVLGNNFAWGSVENPKMSENHFTLSIKPNEFYYKSIPRNFLRKYDIENMNDVMLRVGMKSWHVKLDGYGRFTSGWSEFMSQCNLKAGDVCRFDLIDDKQFVFQVRPVSIEVWNPNGKYRVVSTKSMPGTRWINLLIQNDCRLEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGEELFSALSRAGGKAFSNMAVGYNNVNVDAANKYGVAIGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQATRLEKFVTGMLLPTYASFLKANGETPVTWKRAATMDEVLQEADIISLHPVLDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLGELKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANKVEPFLNENARPPAACPSIVNAKALGLPSSKL 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8405g00001 838 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Mupr8405g00001 838 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 577 774 IPR006140 GO:0051287
Mupr8405g00001 838 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 567 775 IPR036291 -
Mupr8405g00001 838 SUPERFAMILY DNA-binding pseudobarrel domain 6 102 IPR015300 -
Mupr8405g00001 838 ProSiteProfiles B3 DNA-binding domain profile. 364 453 IPR003340 GO:0003677
Mupr8405g00001 838 MobiDBLite consensus disorder prediction 150 174 - -
Mupr8405g00001 838 MobiDBLite consensus disorder prediction 131 149 - -
Mupr8405g00001 838 SUPERFAMILY DNA-binding pseudobarrel domain 217 323 IPR015300 -
Mupr8405g00001 838 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 485 801 - -
Mupr8405g00001 838 SMART B3_2 231 325 IPR003340 GO:0003677
Mupr8405g00001 838 SMART B3_2 367 453 IPR003340 GO:0003677
Mupr8405g00001 838 SMART B3_2 10 102 IPR003340 GO:0003677
Mupr8405g00001 838 SUPERFAMILY DNA-binding pseudobarrel domain 366 451 IPR015300 -
Mupr8405g00001 838 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 481 799 IPR006139 GO:0016616|GO:0051287
Mupr8405g00001 838 Gene3D - 565 773 - -
Mupr8405g00001 838 Gene3D - 3 103 IPR015300 -
Mupr8405g00001 838 CDD B3_DNA 9 100 IPR003340 GO:0003677
Mupr8405g00001 838 Gene3D - 465 798 - -
Mupr8405g00001 838 FunFam Glycerate dehydrogenase HPR, peroxisomal 565 773 - -
Mupr8405g00001 838 Gene3D - 351 454 IPR015300 -
Mupr8405g00001 838 Gene3D - 200 326 IPR015300 -
Mupr8405g00001 838 Pfam B3 DNA binding domain 241 309 IPR003340 GO:0003677
Mupr8405g00001 838 Pfam B3 DNA binding domain 380 450 IPR003340 GO:0003677
Mupr8405g00001 838 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
Mupr8405g00001 838 MobiDBLite consensus disorder prediction 115 175 - -
Mupr8405g00001 838 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 484 603 - -
Mupr8405g00001 838 CDD B3_DNA 220 323 IPR003340 GO:0003677
Mupr8405g00001 838 CDD B3_DNA 366 451 IPR003340 GO:0003677
Mupr8405g00001 838 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 615 643 IPR029752 -
Mupr8405g00001 838 ProSiteProfiles B3 DNA-binding domain profile. 229 325 IPR003340 GO:0003677
Mupr8405g00001 838 CDD GDH 463 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8405g00001 Mupr-Chr8405 939 7594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8405g00001 367 449 B3 DNA Binding Superfamily AT3G18990 31.461 2.01e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mupr8405g00001 2-Hacid_dh 2.3e-15 CL0325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8405g00001 K15893 - gmx:547640 715.687