Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr83g00001 ATGGCAGAGGTTGTGTTACTAGTCGATGATTTGAAATTACTTTCTGGGATTCCTCGCTGTAGAATATGTCACGAAGAAGACTTTGAAAGCTCAGAAAGCTTGGAAGCGCCTTGTGCTTGCTCTGGGACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGTAACGAAAAAGGAAATACAACCTGCGAAATATGTCTCCAGCAATATGAACCCGGATATACAGCTCCACCACCAAAGAAGTCTAAGATAAATGATGAAGCAATGTCCATTAGGGAGGAGCAAGAAGCGTCAAACGCAAGAATAGAGATAATGGTGGAAGGAGTGGCAATAGAAAGCGATTACTCTGAATGCAGCTCTGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTAGCAATAGCTTTTACACTAGTCTTACTTGTGAGACATCTTTTCGCTGTACTTACAAATGGAACGGAAGATTACCCATTTTCACTACTTACAGTCATTATATTAAAGGCTAGCGGAATTATTATGCCCATGTACATAATTATCAAGATTATCGGAGCCATTCAGAACAGTATTCAGCATTATCAGGATTCTGACTATGACACGTCAATGTCTGACGAAGATGACGAACAGCATACTGTAAATTCAAGGCATTAA 651 0.4117 MAEVVLLVDDLKLLSGIPRCRICHEEDFESSESLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTAPPPKKSKINDEAMSIREEQEASNARIEIMVEGVAIESDYSECSSAADRSASCCRSLAIAFTLVLLVRHLFAVLTNGTEDYPFSLLTVIILKASGIIMPMYIIIKIIGAIQNSIQHYQDSDYDTSMSDEDDEQHTVNSRH 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr83g00001 216 SMART ringv_2 19 68 IPR011016 GO:0008270
Mupr83g00001 216 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Mupr83g00001 216 Pfam Protein of unknown function (DUF3675) 73 183 IPR022143 -
Mupr83g00001 216 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Mupr83g00001 216 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Mupr83g00001 216 SUPERFAMILY RING/U-box 18 72 - -
Mupr83g00001 216 CDD RING_CH-C4HC3_MARCH 20 67 - -
Mupr83g00001 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Mupr83g00001 216 MobiDBLite consensus disorder prediction 197 216 - -
Mupr83g00001 216 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 19 192 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr83g00001 Mupr-Chr83 6029 8395 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr83g00001 15 72 C3H Transcription Factor Family AT1G11020 38.710 3.16e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr83g00001 - - gmx:100802379 366.696