Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8394g00001 ATGGACAAAAAACTATGCAACACGTCTCAAGATCCTGAAGTGAGAAAGGGGCCATGGACAATGGAAGAAGACTTGATCTTGATCAACTATATTGCGAATCACGGGGAAGGTGTTTGGAACTCTTTGGCCAAAGCTGCTGGTCTTAAACGTACCGGAAAGAGTTGCAGGCTCCGGTGGCTAAACTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCCGAGGAACAGCTTTTGATCATGGAGCTTCATGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCTAAGCATCTACCGGGAAGGACTGATAATGAGATCAAGAACTACTGGAGGACAAGGATCCAGAAGCACATCAAGCAAGCTGAGAGCTTCCAGCAACAGAGTAATTCTGAGATAAATGATCACCAAGCTAGGACTAGCCAAGTGTCCACCATGGCTGAGCCTATGGAAACCTATTCTCCACCCTGTTATCAAGGAATGTTAGATCCATTTTCAACTCAGTTCCCCACAAATCCTGATCATTCCAGTTCTTGTACCAATGACAACAACAACTATTGGAGCATGGAAGATATCTGGTCAATGCAATTACTAAACGGGGATTAA 603 0.4461 MDKKLCNTSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAESFQQQSNSEINDHQARTSQVSTMAEPMETYSPPCYQGMLDPFSTQFPTNPDHSSSCTNDNNNYWSMEDIWSMQLLNGD 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8394g00001 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Mupr8394g00001 200 Gene3D - 16 68 - -
Mupr8394g00001 200 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Mupr8394g00001 200 Gene3D - 73 144 - -
Mupr8394g00001 200 FunFam Myb-related protein 305 73 142 - -
Mupr8394g00001 200 CDD SANT 73 112 IPR001005 -
Mupr8394g00001 200 SMART sant 68 116 IPR001005 -
Mupr8394g00001 200 SMART sant 15 65 IPR001005 -
Mupr8394g00001 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Mupr8394g00001 200 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Mupr8394g00001 200 CDD SANT 18 63 IPR001005 -
Mupr8394g00001 200 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Mupr8394g00001 200 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Mupr8394g00001 200 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Mupr8394g00001 200 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 149 IPR044676 GO:0003700|GO:0006355|GO:0043565
Mupr8394g00001 200 FunFam Myb transcription factor 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8394g00001 Mupr-Chr8394 4845 9078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8394g00001 4 200 MYB Transcription Factor Family AT3G01530 59.000 9.65e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mupr8394g00001 Myb_DNA-binding 6.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8394g00001 K09422 - gmx:778046 385.956