Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8384g00001 ATGGACCCAACTTCGATCCCTCCCCATCCGCCTTCGCCCAACTCCGCCGCCGCCCCCTTCGCTCTGGAATCCAACAACAATCACGTCATCCCTGCCGACAACCCGAACCCCAACCACCCTCCTTATGACGAGATGATATACACAGCAATCGGAGCGTTGAAGGAGAAAGATGGGTCGAGCAAAAGAGCCATAGGAAAGTACATAGAGCAAGTCTACAAGGACCTTCCACCCACTCACTCTGCTCTCTTGACTCACCACCTCACCCGTTTGAAATCTGCTGGGCTTCTCGTTATGGTAAAAAAATCTTACAAGCTTCCTGGATCTGATGCTGCTGCTGCCGCATCTAACGCTCCCCAATCAGCTCTCACTCCGCAAGCCCATAAGAGCCGCGGTCGGCCACCCAAGCCCAAACCCCAACCCACTGAGCCCGTCTGGGTCGCGCTTGGTCTCTCCGACGACCATGCGACTCAGACTGCAAAAAGAGGCCCGGGTCGTCCTCGAAAGATTGGAGCCGTGGGTGTTAGCCCGGGCTCGGCGGTGCCGGGCCGAAGAGGTCGCCCACCTGGTACCGGGAGATCTAAGCTGCCCAAGAGGCCTGGCCGTCCTCCCAAGCCCAAATCCGTGTCGGCGATCTCCAGTGGACTCAAGCGACGTCCGGGCCGCCCGCCCAAAACCCAATCGAGCCTAACTGTCATCCCCTTCGCGGCCCCTGTTCCTTCTCTCGCTCCCGGCCTGCCCACTGTGCTGCCCATCGTCCCAATTGCTTCTGTGCCTAACGGGTCTCCCAGGCCCAGAGGCAGGCCCAGAAAGACTGTCACTACTAAGGCACCTCTGGCGCTATCTGGCGCTGCTGGTGCAGTCCGTGGTCGTGGCCGTGGACGGCCACGTGGGATCTTGCCAGTGATGAGGCAGGGTCGGCCTCAGAAGCTCGCCGTCGGAAGGCCCAAGAATCCTGCCGGAAGGCCCGTGGGTCGCCCAAAGGGAGCCACAGCTGCAATCACAGCAGCGCATAAGGCCGCTAATGAAGATCTGAGGAAGAAACTTGAACACTTTCAATCAAAAGTGAAGGAGTCTCTTGGCATGCTTAAGCCATATTTTAACCATGAAAGTCCAGTTACTGCAATTGCAGCAATTCAGGAGTTGGAAGTACTGTCAACTTTGGACCTTAAAGCGCCATTGAGGGATGAGACTCAGCAATTGGCACAAGAGGGAGCACCACAGGCACAGGCACAGGGACAGGCACAAGCACAGGCACAGGTGCAGACACAGGTGTATGAGCTGCAATATCCCCAGATAGCACCACAGGCACAAGCACAGGCACAGCCACAGCTGCAGCAATTTTTTCAACCACATACATCAGCCCCAAGCTAG 1371 0.5733 MDPTSIPPHPPSPNSAAAPFALESNNNHVIPADNPNPNHPPYDEMIYTAIGALKEKDGSSKRAIGKYIEQVYKDLPPTHSALLTHHLTRLKSAGLLVMVKKSYKLPGSDAAAAASNAPQSALTPQAHKSRGRPPKPKPQPTEPVWVALGLSDDHATQTAKRGPGRPRKIGAVGVSPGSAVPGRRGRPPGTGRSKLPKRPGRPPKPKSVSAISSGLKRRPGRPPKTQSSLTVIPFAAPVPSLAPGLPTVLPIVPIASVPNGSPRPRGRPRKTVTTKAPLALSGAAGAVRGRGRGRPRGILPVMRQGRPQKLAVGRPKNPAGRPVGRPKGATAAITAAHKAANEDLRKKLEHFQSKVKESLGMLKPYFNHESPVTAIAAIQELEVLSTLDLKAPLRDETQQLAQEGAPQAQAQGQAQAQAQVQTQVYELQYPQIAPQAQAQAQPQLQQFFQPHTSAPS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8384g00001 456 FunFam Histone H1.2 35 115 - -
Mupr8384g00001 456 SMART AT_hook_2 216 228 IPR017956 GO:0003677
Mupr8384g00001 456 SMART AT_hook_2 262 274 IPR017956 GO:0003677
Mupr8384g00001 456 SMART AT_hook_2 181 193 IPR017956 GO:0003677
Mupr8384g00001 456 SMART AT_hook_2 320 332 IPR017956 GO:0003677
Mupr8384g00001 456 SMART AT_hook_2 289 301 IPR017956 GO:0003677
Mupr8384g00001 456 SMART AT_hook_2 127 139 IPR017956 GO:0003677
Mupr8384g00001 456 SMART AT_hook_2 160 172 IPR017956 GO:0003677
Mupr8384g00001 456 MobiDBLite consensus disorder prediction 400 417 - -
Mupr8384g00001 456 MobiDBLite consensus disorder prediction 110 228 - -
Mupr8384g00001 456 MobiDBLite consensus disorder prediction 254 273 - -
Mupr8384g00001 456 Pfam linker histone H1 and H5 family 39 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr8384g00001 456 MobiDBLite consensus disorder prediction 305 329 - -
Mupr8384g00001 456 PANTHER HISTONE H1 8 225 - -
Mupr8384g00001 456 PRINTS AT-hook-like domain signature 158 169 IPR017956 GO:0003677
Mupr8384g00001 456 PRINTS AT-hook-like domain signature 260 270 IPR017956 GO:0003677
Mupr8384g00001 456 PRINTS AT-hook-like domain signature 127 137 IPR017956 GO:0003677
Mupr8384g00001 456 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 38 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr8384g00001 456 SUPERFAMILY "Winged helix" DNA-binding domain 35 114 IPR036390 -
Mupr8384g00001 456 Gene3D - 35 117 IPR036388 -
Mupr8384g00001 456 SMART h15plus2 36 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr8384g00001 456 MobiDBLite consensus disorder prediction 395 417 - -
Mupr8384g00001 456 CDD H15 37 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8384g00001 Mupr-Chr8384 4142 7424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8384g00001 14 108 Single Myb Histone (SMH) Gene Family AT1G49950 38.835 3.71e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8384g00001 - - gmx:547676 521.161