Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8378g00003 ATGTTTATGACATCCCAAACATCTATCTACTCTACCCACCTTCTCAGCTCCAGTTTTGATGATTTTGAAGATTATGTAAATCCAAATAGTCCTGTATATAGGAACTGTGTGTGTCTCAGTTGCTTGATACAGAACTTTTTGAGTGTGTATGCATCAATGTTCCGTAGAGGGGATGTGCATTCAATTCCTTCATCTGTTCAGGGGGCAGCATCTTCTACAGCATCACTTGATAATTCTCTATCTGACATTTACCGTTCTCCTCCAAGGCCATTACCATATGATGCAGAACCCAGATATTTCCGCTTGCAACGTGATGGACTAGTTTCGAGGCGTGAGAAGGGTTCAAGTCATTCGAATGAGGAAACAGAACCTCTAAGAAGTGATGTAGATGTGGATCCAGAGTCTTCAAATTCAGGAGACAAATGGAATGAAAGTGCCTGTGAAGCTGGATCAAAGGTATACCGTTCTAACTCTAAGTCCTCACTAAGACTGTCATCAACAAAATATTCAACTGGAGTTGGCCTTGTCTATGCATCGTCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAGTACACTAAAGAGAATCCAAAGATAATGACAAAATGCGCTCATCATTTTCACCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGAAAGTTAAGCTAA 693 0.4113 MFMTSQTSIYSTHLLSSSFDDFEDYVNPNSPVYRNCVCLSCLIQNFLSVYASMFRRGDVHSIPSSVQGAASSTASLDNSLSDIYRSPPRPLPYDAEPRYFRLQRDGLVSRREKGSSHSNEETEPLRSDVDVDPESSNSGDKWNESACEAGSKVYRSNSKSSLRLSSTKYSTGVGLVYASSEEEDVCPTCLEEYTKENPKIMTKCAHHFHLGCIYEWMERSDNCPVCGKLS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8378g00003 230 Pfam RING-H2 zinc finger domain 181 226 IPR024766 GO:0008270
Mupr8378g00003 230 MobiDBLite consensus disorder prediction 108 137 - -
Mupr8378g00003 230 CDD RING-H2_AIRP1-like 182 228 - -
Mupr8378g00003 230 FunFam E3 ubiquitin-protein ligase At3g02290-like 163 230 - -
Mupr8378g00003 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 229 IPR013083 -
Mupr8378g00003 230 SMART ring_2 186 226 IPR001841 -
Mupr8378g00003 230 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 62 229 - -
Mupr8378g00003 230 MobiDBLite consensus disorder prediction 108 144 - -
Mupr8378g00003 230 SUPERFAMILY RING/U-box 181 228 - -
Mupr8378g00003 230 ProSiteProfiles Zinc finger RING-type profile. 186 226 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8378g00003 Mupr-Chr8378 4513 10545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8378g00003 20 229 C3H Transcription Factor Family AT5G15790 60.465 6.10e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8378g00003 - - gmx:100777068 398.667