Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8335g00004 ATGCTCTTTCTTCTCCCTCTCGCACTGCGCCATATTCAAATACTCTCTGTAAGTAGCACACAAACACAAATATTCGTTCTTCCCCAAACCCTACCCACATTCACTCTCTTTCCGACGATAATGGCCGCCGGCATCGATATGTCGCTCGACGACATCATAAGGCGTTCCGCCGCCGCGGCTTCCCGCCGCCGATTCACGGTTGTGCACAACCCGGCCAGAACGACGCCGTACCCCATCCCGCAGGCAAGGCAACACAGCATGATTCGTGAAATGGTTTTGGACGACGACGCTGCGGCCATGACTGAAAGTGGCACCAAACTCTATATATCTAACTTGGATTATGGAGTTTCCAACGATGATATCAAGCTGCTGTTCTCGGAAGAGGGTGAATTGAAAAGATACACCATTCATTATGACCGGTGTGGGAGATCAAAGGGAACAGCAGAAGTTGTGTTCGTGAGGCACACTGATGCTTTAGCAGCCATAAAAAAATACAACAATATGAGGCTTGATGGAAAACCATTGCAAATTGAGCTTGTTGGAACAAGCTCGGTTGCTCCTGCTGTCACACCTCTCTGTCAAAATAGCTTCCTGGGAAGACCAAATGATGTCCTTATCAGCAAACGAGGAAGGGTTGGAGGTAGCGGGTTCCACAATGACTTTGCACAAGACCACTTTCCAAGGGGCCCTGGAGAAGAGAAGGACCATATTCGAAAGGTATCTTTTGGAGATCTTGATCATGCCTTGGGGAGGTCTCTCCGCCTTCCGAGAGGCCACGCAAAAGTAAAGGGCAACTTTGGAAAGGTGACTGTTAAAGAACTTGATGATGACTTGGAGAAGTATCACTTAGAGGCTAAGCAGATAAAAGAAAATGGAAAGTGA 882 0.4807 MLFLLPLALRHIQILSVSSTQTQIFVLPQTLPTFTLFPTIMAAGIDMSLDDIIRRSAAAASRRRFTVVHNPARTTPYPIPQARQHSMIREMVLDDDAAAMTESGTKLYISNLDYGVSNDDIKLLFSEEGELKRYTIHYDRCGRSKGTAEVVFVRHTDALAAIKKYNNMRLDGKPLQIELVGTSSVAPAVTPLCQNSFLGRPNDVLISKRGRVGGSGFHNDFAQDHFPRGPGEEKDHIRKVSFGDLDHALGRSLRLPRGHAKVKGNFGKVTVKELDDDLEKYHLEAKQIKENGK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8335g00004 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 182 IPR000504 GO:0003723
Mupr8335g00004 293 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 45 285 - -
Mupr8335g00004 293 CDD RRM_THOC4 105 179 - -
Mupr8335g00004 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Mupr8335g00004 293 Coils Coil 271 291 - -
Mupr8335g00004 293 SMART rrm1_1 106 178 IPR000504 GO:0003723
Mupr8335g00004 293 SUPERFAMILY RNA-binding domain, RBD 96 180 IPR035979 GO:0003676
Mupr8335g00004 293 Gene3D - 82 235 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8335g00004 Mupr-Chr8335 42073 44340 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8335g00004 104 180 Eukaryotic Initiation Factors Gene Family AT1G71770 32.468 3.75e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8335g00004 K12881 - gmx:100785926 377.867