Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8324g00002 ATGCAGATCTTCGTGAAAACTCTAACCGGGAAGACGATCACCTTGGAGGTGGAGAGTTCCGATACCATCGATAACGTGAAGGCGAAGATTCAGGATAAGGAAGGGATTCCACCGGACCAGCAGCGACTTATCTTCGCCGGAAAACAGCTGGAGGATGGCCGAATTCCACCGGACCAGCAGCGTCTCATCTTCGCCGGAAAACAGCTGGAGGACGGCCGTACCCTCGCCGACTATAACATCCAGAAGGAGTCCACACTCCACCTGGTCCTCCGCCTCCGCGGAGGGATGCAGATCTTTGTGAAGACGCTAACTGGAAAAACGATTACTCTCGAGGTGGAGAGTTCTGACACCATCGATAACGTGAAAGCGAAGATTCAGGACAAGGAAGGAATTCCACCGGACCAGCAGCGACTCATCTTTGCCGGAAAACAGCTGGAAGACGGCCGCACCCTTGCGGATTACAATATCCAGAAGGAATCTACTCTTCACCTTGTCCTTAGGCTCCGTGGTGGCTGTGTCTAA 522 0.5326 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGCV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8324g00002 173 Pfam Ubiquitin family 3 54 IPR000626 GO:0005515
Mupr8324g00002 173 Pfam Ubiquitin family 98 169 IPR000626 GO:0005515
Mupr8324g00002 173 ProSiteProfiles Ubiquitin domain profile. 1 95 IPR000626 GO:0005515
Mupr8324g00002 173 Gene3D - 1 51 - -
Mupr8324g00002 173 FunFam Polyubiquitin 3 96 171 - -
Mupr8324g00002 173 FunFam Polyubiquitin-C 1 55 - -
Mupr8324g00002 173 SUPERFAMILY Ubiquitin-like 1 54 IPR029071 -
Mupr8324g00002 173 SUPERFAMILY Ubiquitin-like 94 172 IPR029071 -
Mupr8324g00002 173 PRINTS Ubiquitin signature 106 126 IPR019956 -
Mupr8324g00002 173 PRINTS Ubiquitin signature 148 169 IPR019956 -
Mupr8324g00002 173 PRINTS Ubiquitin signature 127 147 IPR019956 -
Mupr8324g00002 173 CDD Ubl_ubiquitin 96 171 - -
Mupr8324g00002 173 ProSiteProfiles Ubiquitin domain profile. 96 171 IPR000626 GO:0005515
Mupr8324g00002 173 PANTHER UBIQUITIN 55 97 - -
Mupr8324g00002 173 SUPERFAMILY Ubiquitin-like 55 95 IPR029071 -
Mupr8324g00002 173 SMART ubq_7 96 167 IPR000626 GO:0005515
Mupr8324g00002 173 SMART ubq_7 1 91 IPR000626 GO:0005515
Mupr8324g00002 173 ProSitePatterns Ubiquitin domain signature. 122 147 IPR019954 -
Mupr8324g00002 173 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Mupr8324g00002 173 Gene3D - 53 95 - -
Mupr8324g00002 173 Gene3D - 96 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8324g00002 Mupr-Chr8324 7773 8390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8324g00002 1 96 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 79.167 2.74e-45 144